LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g07962	ATGAATCTCATTGATTTTAGGATAGATGGAAGCAGTTTATCCGGACAAATACCCAGTTTTATTGGGAACTGGACCAAACTTGACAGATTGGATATGCAGGGAACATCTATGGAAGGCCCAATTCCACCAACCATATCTCAGTTGAAGCTTTTGACTGAATTGAGAATAACTGATTTGAATGGACCAACTATGACGTTTCCTGATCTGAAGGATTTGAAAAACTTGAAACGACTGGTATTGAGAAATTGCTTAATCATCGGTCCCATTCAGGATTACATTGGTGAAATGGAAAAATTAGTTACTCTAGACCTAAGCTTCAATAGGTTGACTGGTTCAATCCCAAATTCAATTCAGGGATTGAAAGGACTAGATTACATGTTTCTGACTAATAATTCTTTGAGCGGACCGATTCAAGACTGGATACTGAAATCCAAAATTAAAATAGATTTATCTTACAACAATTTTTCAAAATCTACTGCATCTAGCTGCCAGCAATTGGATGTGAACTTGGCTTCAAGCCATTCTTCTTCTGCAGTCACATCGCCTTCAACATTTTGTTTGAAGAGGAACCTACCTTGTGCAGGAAAACCCCAGTATCATTCACTGTTCATAAACTGTGGAGGACCTGAAGGGGAGTTTGAGGGCAATAACTTTGTAGGAGATCTCCAGAAAGATGGCATTTCAAACTTTGTTCTTAGAAATGAAGGGCAATGGGCTTATAGCAGCACAGGAGTGTTTCTAGGAAAAGATGATGCAGATTATACAGCAGAAAATACACTTTCTTTAAATATTAGTGGTCCAGAATACTATCAAACTGCACGCCTTGCTCCTCTGTCACTTAATTACTATGGCCTTTGTATGCTGAATGGCAATTATAAAGTGAAGCTACATTTTGCTGAGATAATGTATACTGATGATCATACTTATAGCAGTCTTGGAAGGCGCATATTTGATGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTATGGAAGCAGCTGGTGGAGTTGGAAAAGGCATCACTAGGGAATTTAATGTGGATGTTAATGATAGCACCTTAGAAATCCACTTATACTGGGCAGGGAAAGGAACTACAGCCATTCCTGATAGAGGTGTATATGGACCTCTTATATCTGCTATCTCAATAACACCAAACTTTGAAATTCCTTCAGATAAAGGGTTGTCTGCTGGAGCTATTGCTGGAATTGTGGTTGGCTCATGTGTGTTTGTCATACTGATACTGGTTGCCCTTTGGAAGATGGGTTTCCTTGGTGGGAAAGATACAACAGACAAAGAACTTCTAGATCTGAAAACTGGTTATTTCAGCTTAAGACAAATTAAAGCAGCCACTAATAACTTTGACCCCTCAAATAAGATAGGTGAAGGAGGATTTGGGCCAGTATACAAGGGTGTGCTGCCAGATGGTGATGTGATTGCTGTTAAACAGCTCTCCTCCAAATCAAAGCAAGGGAACCGTGAATTTGTTAATGAAATTGGAATGATATCTGCTTTGCAACATCCAAATCTTGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAATTGCTGCTGATATATGAGTACATGGAGAACAACAGTCTTGCCCGTGCACTTTTTGGTAAACAAGAGCAGAAGCTGCACTTAGACTGGCCCACAAGAATGAAGATCTGTTTGGGGATAGCAAGGGGATTAGCTTATCTTCATGAAGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGACAAGGATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACACATATCAGTACTAGGATAGCTGGAACAATTGGTTACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTGGAGATTGTTAGTGGAAAAAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTATATCTTCTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGATTTGGTGGATCCAAGTCTTGGTTCAAGGTACTCACCAGAGGAGGCCATGAGAATGCTGAGCTTGGCACTTTTATGCACCAATCCATCTCCCACTCTTAGACCATCCATGTCATCTGTAGTGAGCATGCTTGAAGGGAAAACTCCTATCCAAGCACCAATAATCATGCGCAGTGAGAGTAGCCAAGATGCAAGATTTAAAGCCTTTGAGTTTCTATCACATGACAGCCAAACCCTTGTTTCTTCTGCATTCTCACAGGAAAGTGTAGAGCAAAGACCGAGATTAGCAGATGGGCCATGGGTTGACTCCTCCATATCTCTTCAGAGTGAAGATGAGCATTCTTCAACCAGTAAACTTCTTTGA	2412	0.4013	MNLIDFRIDGSSLSGQIPSFIGNWTKLDRLDMQGTSMEGPIPPTISQLKLLTELRITDLNGPTMTFPDLKDLKNLKRLVLRNCLIIGPIQDYIGEMEKLVTLDLSFNRLTGSIPNSIQGLKGLDYMFLTNNSLSGPIQDWILKSKIKIDLSYNNFSKSTASSCQQLDVNLASSHSSSAVTSPSTFCLKRNLPCAGKPQYHSLFINCGGPEGEFEGNNFVGDLQKDGISNFVLRNEGQWAYSSTGVFLGKDDADYTAENTLSLNISGPEYYQTARLAPLSLNYYGLCMLNGNYKVKLHFAEIMYTDDHTYSSLGRRIFDVSIQGFKYLKDFNIMEAAGGVGKGITREFNVDVNDSTLEIHLYWAGKGTTAIPDRGVYGPLISAISITPNFEIPSDKGLSAGAIAGIVVGSCVFVILILVALWKMGFLGGKDTTDKELLDLKTGYFSLRQIKAATNNFDPSNKIGEGGFGPVYKGVLPDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGKQEQKLHLDWPTRMKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDPSLGSRYSPEEAMRMLSLALLCTNPSPTLRPSMSSVVSMLEGKTPIQAPIIMRSESSQDARFKAFEFLSHDSQTLVSSAFSQESVEQRPRLADGPWVDSSISLQSEDEHSSTSKLL.	804

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g07962	803	Gene3D	Ribonuclease Inhibitor	1	191	IPR032675	-
	Seca3g07962	803	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	2	757	-	-
	Seca3g07962	803	Gene3D	Phosphorylase Kinase; domain 1	425	531	-	-
	Seca3g07962	803	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	578	590	IPR008271	GO:0004672\|GO:0006468
	Seca3g07962	803	SMART	serkin_6	456	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g07962	803	Pfam	Leucine rich repeat	74	133	IPR001611	GO:0005515
	Seca3g07962	803	MobiDBLite	consensus disorder prediction	768	803	-	-
	Seca3g07962	803	Gene3D	-	200	388	-	-
	Seca3g07962	803	Pfam	Protein tyrosine and serine/threonine kinase	460	726	IPR001245	GO:0004672\|GO:0006468
	Seca3g07962	803	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	532	739	-	-
	Seca3g07962	803	Gene3D	Transferase(Phosphotransferase) domain 1	532	744	-	-
	Seca3g07962	803	SUPERFAMILY	L domain-like	4	172	-	-
	Seca3g07962	803	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g53440	61	184	-	-
	Seca3g07962	803	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	199	388	-	-
	Seca3g07962	803	Pfam	Malectin domain	202	383	IPR021720	-
	Seca3g07962	803	SUPERFAMILY	Protein kinase-like (PK-like)	440	728	IPR011009	-
	Seca3g07962	803	ProSiteProfiles	Protein kinase domain profile.	456	738	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g07962	803	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	428	531	-	-
	Seca3g07962	803	CDD	STKc_IRAK	462	729	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g07962	Seca-Chr3	201484856	201500109	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g07962	2	794	Receptor kinase-like Gene Family	AT1G53440	66.542	0.0	1064

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca3g07962		PK_Tyr_Ser-Thr	9.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g07962	-		-	gmx:100817368	1350.11