Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07960 ATGAAACATATGGCTTCCCCAAATATCTTCCTCCTTTCGGTCCTTGTTGCCTTTTGCTTCACCTATTTAGCTTTTGGAGCCACTCTGCCAGAAGATGAAGTGGAAGCTCTGAAGGAGATAGGTAAGAGACTTGGGAAGAAAGATTGGGATTTCAGTGTAGATCCATGCAGCGGAGAACGTAATTGGACATCACCTAAAGTGAGAGGGAACGAAAATAATGTCACCTGCAATTGCTCCTTTGTCATTGGCACCATCTGCCATGTTACTAACATAGTTTTGAAGGCACAAAATCTCCCAGGCACTCTCCCGCCAGAACTGGTCAGGTTGCCTTACCTTCAACGCATTGACCTTAGTCGCAATTACCTCAACGGCACAATTCCTAAAGAATGGGGCTCCATGACGAATCTTGTCTACATTTCCCTGAATGAAAATAGAGTATCGGGTTCAATCCCAGTAGAGCTAGCAAACATCACCACTCTACAAAGCTTGAGCCTAGAGTTCAACCAACTGTCTGGAAATCTTCCTCCTGAACTTGGGAGTTTACCCAAACTTCAAAGATTGCTACTTACTTCCAACAATTTTACTGGAGAAATACCAGCAACATTTGCCCAGCTCACAACCTTGCAGGATGTCCGAATTGGAGACAATAAATTATCTGGAAAGATTCCTGATTTTATCCAAAGCTGGACAAATCTCCAGAAACTAGTGATTCAAGGGACTGGATTAAGTGGGCCAATTCCTTCTGGAATTTCACTTCTGGAAAATTTGACTGATTTGAGAATTAGTGATCTAAATGGATCTGAATATTTTCCTTTTCCACAACTCAATAATATGACAAATTTGAACATTTTGATTCTGAGAAGTTGCAACATTAATGGAACAATACCTGAATATCTTGGGACAATAACAAGCTTAGAAACCTTAGACCTCAGCTATAACAAATTAAGTGGAGAAATTCCAAGAAGCTTTGAATATGGCCTAAGAAACACAAATTATATATATTTAACTGGAAACCTTCTCACTGGACCAGTACCTGCATGGACAGAGAAAGCAAAAAATATAGATCTTTCATACAATAACTTCACCATTGGAAGCCAAGGGCAGCATGCATGTCAACAGGAGAATGTTGCCATGCTAATGAGGCTAGTGCAAATATATCTTTTATGCATGATTTCTCTTGCTCACTCTATTCTGCTTATCTCAGTCTCGTACTCTCTTCGCATAAATTGTGGTGGAAAGCAAGTAACAATCAATGGAAGTGAAACATATGGTGCTGATACAGATACAGCAGGACCAGCTAGATTCCACCTTGGTGGAACTAACTGGGCATTTAGCAGCACTGGTCACTTCTTGGATAATGATCGTGGAGACTATTCTATTTGGCCAAGTCAATCTACCCTTTCCATGACCAATGCTGAATTATACATGGATGCACGTGTTTCTCCCATTTCTTTGACTTATTATGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTACACTTTGCAGAGGTCATGTTCACCGACGATCAAACATATAACAGCCTAGGAAGGCGTGTATTTAACGTCTACATTCAGGGAAATCTGGTGTTGAAGGATTTCAATATTGCAGAAGAAGCAGGGGGAGTTAATAAGGCAGTCACAAAAGCATTCACTGTTGTGATTAGTAGTAACACATTGGATATCCGCTTATATTGGGCTGGAAAAGGGACAATTGGAATTCCATTTAAATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGAATCCTGACTTCACACCTCCCTCAGAAAAGGGAAGTAGCATGTCTGCAGGGGCTGTGGTTGCAATTGTGGCTGCTGTAGTAGTTATTTTCATCCTGGGGTTTGGTATACTTTGGTGGAGAGGTTGTCTAGAGAAAAGTTCATTATCAAGAGAGCTAAAGGGTTTAGATCTCCAAACGGGTTTGTTCACCTTACGACAAATCAAAGCAGCAACAAACAACTTCAATATTGCTAATAAGATTGGAGAAGGAGGGTTTGGTCCTGTGTACAAGGGAAATTTATTGGATGGGACAATAATAGCAGTCAAGCAACTCTCCTCTAAATCAAGGCAAGGGAATCGTGAGTTTATAAATGAGATAGGCTTGATTTCAGCTTTGCATCACCCTTGTCTTGTTAAACTCTATGGCTGTTGTGTTGAGGGAGATCAATTGTTGTTGGTATATGAATATATGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGCCCAGAAGAATGCCAAATAAAATTGGACTGGCCAACAAGACAAAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCATACCTTCATGAAGAATCAAGATTGAAAATTGTTCATAGGGACATCAAAGCCACTAATGTTTTGCTTGATAAAGATCTCAATCCAAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAGGACAATACCCACATAAGCACTCGAATTGCTGGGACTTATGGGTACATGGCTCCTGAATATGCTATGCATGGTTATTTGACTGACAAAGCCGATGTCTATAGCTTTGGAATTGTTGCCTTGGAAATTGTAAGTGGGAGGAGCAATATTGTTCAACGCCCAAAAGAAGAAGCATTCCATCTTCTTGATTGGGCACATCTATTGAAAGCGAAAGGTAATCTAATGGATCTAGTTGATAAAAGATTGGGTTTGGACTTCAACAAAGATGAGGTAAACGTGATGATCAATGTGGCTCTTCTATGCACCAATGCCACTGCCTCCCTCAGGCCTACAATGTCTTCAGTATTAAACATGCTTGAAGGAAGATCTGTTGTACTGGAGGTAGTTCCAGAGCCGAGTGAGGTATTGGATGAGAAGAAGTTAGAGGCCATGCAACGATTTTACCAAGACCAAAGTATCTCAGTGGATGACCCATTGATTGCTTCATCTACATCAGTAGATCTCTATCCTATAAACCTGGATTCTTCTTACTGGGAGAAAAGAGGTTAG 2997 0.4051 MKHMASPNIFLLSVLVAFCFTYLAFGATLPEDEVEALKEIGKRLGKKDWDFSVDPCSGERNWTSPKVRGNENNVTCNCSFVIGTICHVTNIVLKAQNLPGTLPPELVRLPYLQRIDLSRNYLNGTIPKEWGSMTNLVYISLNENRVSGSIPVELANITTLQSLSLEFNQLSGNLPPELGSLPKLQRLLLTSNNFTGEIPATFAQLTTLQDVRIGDNKLSGKIPDFIQSWTNLQKLVIQGTGLSGPIPSGISLLENLTDLRISDLNGSEYFPFPQLNNMTNLNILILRSCNINGTIPEYLGTITSLETLDLSYNKLSGEIPRSFEYGLRNTNYIYLTGNLLTGPVPAWTEKAKNIDLSYNNFTIGSQGQHACQQENVAMLMRLVQIYLLCMISLAHSILLISVSYSLRINCGGKQVTINGSETYGADTDTAGPARFHLGGTNWAFSSTGHFLDNDRGDYSIWPSQSTLSMTNAELYMDARVSPISLTYYGFCLGNGNYTVNLHFAEVMFTDDQTYNSLGRRVFNVYIQGNLVLKDFNIAEEAGGVNKAVTKAFTVVISSNTLDIRLYWAGKGTIGIPFKSVYGPLISAISVNPDFTPPSEKGSSMSAGAVVAIVAAVVVIFILGFGILWWRGCLEKSSLSRELKGLDLQTGLFTLRQIKAATNNFNIANKIGEGGFGPVYKGNLLDGTIIAVKQLSSKSRQGNREFINEIGLISALHHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEECQIKLDWPTRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNIVQRPKEEAFHLLDWAHLLKAKGNLMDLVDKRLGLDFNKDEVNVMINVALLCTNATASLRPTMSSVLNMLEGRSVVLEVVPEPSEVLDEKKLEAMQRFYQDQSISVDDPLIASSTSVDLYPINLDSSYWEKRG. 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07960 998 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Seca3g07960 998 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 967 - -
Seca3g07960 998 SUPERFAMILY L domain-like 70 346 - -
Seca3g07960 998 PRINTS Leucine-rich repeat signature 302 315 - -
Seca3g07960 998 PRINTS Leucine-rich repeat signature 112 125 - -
Seca3g07960 998 Pfam Protein tyrosine and serine/threonine kinase 666 934 IPR001245 GO:0004672|GO:0006468
Seca3g07960 998 Pfam Malectin domain 405 588 IPR021720 -
Seca3g07960 998 Gene3D Ribonuclease Inhibitor 268 377 IPR032675 -
Seca3g07960 998 Gene3D Ribonuclease Inhibitor 33 199 IPR032675 -
Seca3g07960 998 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
Seca3g07960 998 SMART serkin_6 664 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07960 998 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Seca3g07960 998 Pfam Leucine rich repeat 110 170 IPR001611 GO:0005515
Seca3g07960 998 Pfam Leucine rich repeat 280 340 IPR001611 GO:0005515
Seca3g07960 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Seca3g07960 998 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 33 192 - -
Seca3g07960 998 Gene3D - 402 593 - -
Seca3g07960 998 ProSiteProfiles Protein kinase domain profile. 664 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07960 998 Gene3D Phosphorylase Kinase; domain 1 633 739 - -
Seca3g07960 998 Gene3D Transferase(Phosphotransferase) domain 1 740 944 - -
Seca3g07960 998 Gene3D Ribonuclease Inhibitor 200 267 IPR032675 -
Seca3g07960 998 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 593 - -
Seca3g07960 998 CDD STKc_IRAK 670 937 - -
Seca3g07960 998 SUPERFAMILY Protein kinase-like (PK-like) 648 966 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07960 Seca-Chr3 201425028 201441523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07960 22 981 Receptor kinase-like Gene Family AT1G53420 54.995 0.0 1004
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07960 PK_Tyr_Ser-Thr 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07960 - - gmx:732563 1399.42