Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07959 ATGACTCTCTTCCCTCTATGTTCTCTTCTTTTCCTTCTCCCTCTCTGCTTTGCAGCCACTCTGCAAAAAGATGAAGTGGAAGCTTTGAAGGACATAGCAAAGACACTTGGGAAGAAGGATTGGGACTTCACAGTAGATCCATGTAGTGGAAAAAATAACTGGATATCACCAACTCAATTACAAGGAGCTGAAAATGCTGTGACCTGCAATTGCTCTTTCAGCAATAACACAGTCTGCCATGTTGTAAGCGTTGTTTTAAAAGCACAAAATCTTTCTGGAACTCTCCCACCAGATCTTGTCAGGTTGCCTTATCTCCAAGAAATTGATCTCACCCTCAACTACCTTAATGGTACAATTCCTAAACAATGGACCACACTCAATCTTGTCAACATTTCCTTCTATGGAAACCGTCTATCGGGTCCAATTCCAAAGGAGCTTGGAAAGATCACTACTCTCAAAAGCTTGGTATTGGAGTTCAACCAATTATCTGGAAATCTTCCTCCAGAGCTTGGGATTCTTCCTCAGCTTGAAAGACTGCTTCTTAACTCCAATAATTTCACTGGAGAGTTACCTGCAACATTTGCAAGGCTCACTAGATTGAAGCAATTTCGAATTGGCGACAACCAATTTTCTGGAGCAATACCCAAATTTATACAGAACTGGATAAATCTTGAGATGCTAGTGATTCAAGGGAGTGGTTTGAGTGGGCCAATTCCTTCTGGAATTTCACTTCTAAGAAACCTTACTGACTTGACTATTACAGACTTGAATGGACCTGGTTCACCTTTTCCAAACCTAGAAAATATGCCAAAATTGTCAAAACTGATATTGAGGAGTTGCAATATCATTGGAGAAGTGCCTGACTATCTTGGAAATTTTACTAACCTGAAAGTGATTGACGTCAGCTACAACAAATTAAGTGGACAAATCCCCATGAGTTTTAATGATCTAAAGAACATGTATATGCTAGTTTTATCTCGGAATCTTTTGTCTGGATCGCTGCCTGAGTGGATTGATAAACCCGACTTTGTGGATCTCTCCTATAACAACTTCACTATCACAAACTATGAGCAGCAGACTTGTCAACAAGGCACCGTGAACTTGTTTGCATCCTCCTTGAATGGCAACAACTTAGGAAATATTTCATGTTTGGCAAACTATCGCTGTCCTAAAAAGCTTCATACTCTCTATATAAATTGTGGTGGAAAGCTGGTAACTTCTAGTGGAAATAAGACATATGAGGATGATTCAAGTGAAATGGGACCGACAAGGTTTCGTCAGACTGGAACAAACTGGGCAATTATCACTGCTGGTCACTTCTTTGATAGTGGTCGCAGCACTGACTACTACACATGGTCAAATACAACCAAGCTTGCTGTGGACAATGCTGAATTGTACATGGATGCACGTGTTTCTCCAAATTCTCTTACTTACTATGGATTTTGCCTTGGAAATGGAAACTACACAGTGAATCTCCATTTTGCAGAAATAATGTTCACTGATGACAAAACTTATAGTAGTCTTGGACGGCGTGTATTTGACATCTACATTCAGAGAAAGTTGGTGGCAAAGGATTTCAATATTGCAAAAGAAGCAGGCGGTGTTGGTAAGGCAGTCATTAAAAAGTTCACTGCCATTGTTACCAGTAACGCCTTGGAGATCCGTTTATATTGGGCTGGGAAAGGAACAACTACTATCCCCTTTGGATCAGTATATGGTCCTCTTATATCAGCTATATCAGTTGATCCTGACTTTATACCCCCATTGGAAAATAATACAAGCATTTCAGCAGGGGTTGTGGTTGCAATTGTGGCTGCAGCAGTAATTGTTATCATCTTAGTATTTGGTATACTGTGGTGGAAGGGTTGTTTCAGACTGAAAAGTTCAGGGGCAAGAGAGCTAAAGGGTTTAGGTGCCCAAACTGGTTTATTTACATTACGACAAATCAAAGCAGCAACAAACAACTTTCATGAGTCTTTCAAGATTGGAGAAGGAGGGTTCGGTCCTGTTTACAAGGGAATTTTGTCAGATGGAAGAATAGTAGCAATTAAGCAACTTTCTTCTAAATCAAGGCAAGGGAATCGAGAATTTATAAATGAGATAGGCTTGATTTCTGCTTTGCAACACCCTAATCTAGTTAAGCTCTACGGATTTTGTATGGAGGATGGCCAGTTGCTGCTAATATATGAATACATGGAAAACAATAGCCTGGCTCATGCTTTATTTGTAAAAAAGGAAGACACAGAGAAACGTCAATTGAAATTGGATTGGCAAACAAGGCAGAGGATTTGCATTGGTATCGCTAAAGGTTTAGCATACCTTCATGGAGAGTCAAGGCTTAAGATTGTTCATAGGGACATCAAGGCTACTAATGTTTTGCTGGATAAAGATCTCAACCCAAAGATTTCTGATTTTGGTTTGGCCAAGCTCAATGAAGAGGACAAAACCCATATGAGCACCAGAATAGCTGGCACTTATGGGTACATGGCTCCTGAGTATGCAATGCATGGTTATTTGACGGATAAAGCTGATGTTTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGAACCAACAACACCATTAGCCATCCTCAGGAAGAATGCTTCTGTCTTCTAGATTGGGTGCATCTCTTGAAAGACAAAGGTAATGTAATGGATCTTGTTGACTGGAGGTTGGGTGGAGACTACAACAACGATGAGGTAATGGTGATGATCAATGTGGCTCTTCTATGTACAAGTGTCTCGCCAATGCTGAGGCCCTCTATGTCTTCAGTGCTAAGCATGCTTGAAGGAAGAACTATTGTTCAAGATGTAGTGCCAGACACAAGAGAGGTATTGGATGATAAGAAATTTGAGGTGATGCAACAGTACTACAAACAAAGAGGAGAATAG 2898 0.4027 MTLFPLCSLLFLLPLCFAATLQKDEVEALKDIAKTLGKKDWDFTVDPCSGKNNWISPTQLQGAENAVTCNCSFSNNTVCHVVSVVLKAQNLSGTLPPDLVRLPYLQEIDLTLNYLNGTIPKQWTTLNLVNISFYGNRLSGPIPKELGKITTLKSLVLEFNQLSGNLPPELGILPQLERLLLNSNNFTGELPATFARLTRLKQFRIGDNQFSGAIPKFIQNWINLEMLVIQGSGLSGPIPSGISLLRNLTDLTITDLNGPGSPFPNLENMPKLSKLILRSCNIIGEVPDYLGNFTNLKVIDVSYNKLSGQIPMSFNDLKNMYMLVLSRNLLSGSLPEWIDKPDFVDLSYNNFTITNYEQQTCQQGTVNLFASSLNGNNLGNISCLANYRCPKKLHTLYINCGGKLVTSSGNKTYEDDSSEMGPTRFRQTGTNWAIITAGHFFDSGRSTDYYTWSNTTKLAVDNAELYMDARVSPNSLTYYGFCLGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYIQRKLVAKDFNIAKEAGGVGKAVIKKFTAIVTSNALEIRLYWAGKGTTTIPFGSVYGPLISAISVDPDFIPPLENNTSISAGVVVAIVAAAVIVIILVFGILWWKGCFRLKSSGARELKGLGAQTGLFTLRQIKAATNNFHESFKIGEGGFGPVYKGILSDGRIVAIKQLSSKSRQGNREFINEIGLISALQHPNLVKLYGFCMEDGQLLLIYEYMENNSLAHALFVKKEDTEKRQLKLDWQTRQRICIGIAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLNEEDKTHMSTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGTNNTISHPQEECFCLLDWVHLLKDKGNVMDLVDWRLGGDYNNDEVMVMINVALLCTSVSPMLRPSMSSVLSMLEGRTIVQDVVPDTREVLDDKKFEVMQQYYKQRGE. 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07959 965 SUPERFAMILY Protein kinase-like (PK-like) 641 934 IPR011009 -
Seca3g07959 965 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 263 354 - -
Seca3g07959 965 Gene3D - 394 583 - -
Seca3g07959 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Seca3g07959 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase 732 943 - -
Seca3g07959 965 Gene3D Phosphorylase Kinase; domain 1 623 731 - -
Seca3g07959 965 Gene3D Ribonuclease Inhibitor 258 389 IPR032675 -
Seca3g07959 965 Gene3D Transferase(Phosphotransferase) domain 1 732 949 - -
Seca3g07959 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 190 257 - -
Seca3g07959 965 Gene3D Ribonuclease Inhibitor 191 257 IPR032675 -
Seca3g07959 965 Gene3D Ribonuclease Inhibitor 25 190 IPR032675 -
Seca3g07959 965 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 625 731 - -
Seca3g07959 965 Pfam Leucine rich repeat 270 330 IPR001611 GO:0005515
Seca3g07959 965 SUPERFAMILY L domain-like 69 398 - -
Seca3g07959 965 Pfam Malectin domain 395 579 IPR021720 -
Seca3g07959 965 SMART serkin_6 656 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07959 965 Pfam Protein kinase domain 657 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07959 965 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 25 184 - -
Seca3g07959 965 CDD STKc_IRAK 662 933 - -
Seca3g07959 965 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 954 - -
Seca3g07959 965 ProSiteProfiles Protein kinase domain profile. 656 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07959 965 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 393 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07959 Seca-Chr3 201345269 201355412 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07959 18 965 Receptor kinase-like Gene Family AT1G53420 53.710 0.0 982
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07959 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07959 - - gmx:100798947 1355.12