Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07957 ATGTCCTTAGTTTTTATTTTCAATCCATTTTTTCTTTGTTTTGTTTTAACGAGCTTCCTAAGCTTTTTTCCATTTCCCATATGCAATAGGAACTTGTTTGCATCCTCTTCTAGTGGCAACAGCTTAGGAAATATTTCATGTTTGCCAAACAATATGTGTCCTAAAAATTCGTACTCTCTCTATATAAATTGTGGTGGAAATCTCGTAACTTCTATGGGAAACAAGACATATGATGATGATTCATTTGAGATGAAACCAGCAATGTTTCATAAAGCTGGAACGAACTGGGCAATTATTACTACTGGTCATTTCTTTTATAATGGTAAACGCTCTGACAAATACTATTGGTCTAATACAACAAAGCTTGGTATGGACAATGCTCAACTATACATGGACGCACGCATTTCTCCAAATTCTCTAATTTACTACGGATTTTGCCTTGAGAAGGGAAACTACACAGTGAGTCTTCACTTTGCAGAAATAATGTTCACCGGTGATAAAACGTATAGCAGCCTTGGAAGGCGTGTATTTGACATCTACGTTCAGAGAAAGTTGGTGGCGAAGGATTTCAACATTGTAAAAGAAGCAGGAGGTGTTGGTAAGCCATTCATTAAAAATTTTAGTGTTGAAGTGACTAGTAATGCCCTAGAGATTCGCTTATATTGGGCTGGGAAAGGAACGACTATGATCCCATTTACTACCATCTCATTTGGATCGGTATATGGTCCTCTTATATCAGCTATATCTGCAGACTCTATACTCCCATTGGAATTGGAAAATAATAATAGAAGCATACCTGTAGGGGTTGTGATTGCGATTGTGGCTGTAGGAGCAATTATTATCATAATGGTATTTGGTATACTGTGGTGGAAGGGTTGTTTAAGACTAAAAAGTGTAGGGGCAGAAGAGCTAAAGGGTTTAGGTTCACAAATTGGTTCATTTACATTACGGCAAATCAAAGTAGCAACAAACAACTTTGATAAGTCATTTAAAATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGCGTTTTGTCAGATGGAATAATAGTAGCAATTAAGCAACTTTCTTCTAAATCAAGGCAAGGAAATCGAGAATTTATAAATGAGATAGGCTTGATTTCAGCTTTGCAACACCCTAATCTAGTTAAGCTCTATGGATTTTGTATGGAGGGTGATCAATTGTTGCTGATATATGAATACATGGAAAACAATAGCCTTGCTCATGCTTTATTTGCAAAAAAGGAAGGCCCGGAGAAATGTCAGTTGAAATTGGATTGGCAAACAAGGCAAAGAATTTGTGTTGGTATTGCTAAAGGTTTAGCTTACCTTCATGAAGAATCAAGATTTAAGATTGTTCATAGGGACATCAAGACCACTAATATTTTGCTGGATAAAGATCTCAACCCAAAAATATCTGATTTTGGTTTGGCCAAACTCAATGAAGAGGATAATACCCATATAAGCACCAGAATAGCTGGCACTTATGGATACATGGCCCCCGAGTATGCAATGCATGGTTATTTGACTGACAAGGCCGATGTTTATAGTTTTGGAATTGTTGTTTTCGAAATTGTTAGTGGAATCAGCAACACCATTAGCCATCCTCGAGAAGAATGCTTCTCTCTTCTTGATTGGGTGCATCTCTTGAAAGAAAAAGGGAATATGATGGATCTTGTTGATCGGAGGTTGGGTGAAGACTTCAACAGAGATGAGGTGATGGTGATGATCAATGTGGCTAATCTATGCACCAGTTTGTCTCCAATGTTGAGGCCCACAATGTCTTCAGTGCTAAACATGCTTGAAGGAAGAACAATTGTTCAAGAGGTGAAGTCAGACACAAGCAAGGTGCTAGATGATAAAAAATTTGAGGTGATGCGACAATACTTCCAAGAAAGAGGAGAAAATAATATAATTGAGTCTCAAATCCAAAGCATTGCAATAGATGAATCTCATGCATTAATATATGATACGGATTCCTTTCAAAGGGAAAACATAAATTAG 2004 0.3733 MSLVFIFNPFFLCFVLTSFLSFFPFPICNRNLFASSSSGNSLGNISCLPNNMCPKNSYSLYINCGGNLVTSMGNKTYDDDSFEMKPAMFHKAGTNWAIITTGHFFYNGKRSDKYYWSNTTKLGMDNAQLYMDARISPNSLIYYGFCLEKGNYTVSLHFAEIMFTGDKTYSSLGRRVFDIYVQRKLVAKDFNIVKEAGGVGKPFIKNFSVEVTSNALEIRLYWAGKGTTMIPFTTISFGSVYGPLISAISADSILPLELENNNRSIPVGVVIAIVAVGAIIIIMVFGILWWKGCLRLKSVGAEELKGLGSQIGSFTLRQIKVATNNFDKSFKIGEGGFGPVYKGVLSDGIIVAIKQLSSKSRQGNREFINEIGLISALQHPNLVKLYGFCMEGDQLLLIYEYMENNSLAHALFAKKEGPEKCQLKLDWQTRQRICVGIAKGLAYLHEESRFKIVHRDIKTTNILLDKDLNPKISDFGLAKLNEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVFEIVSGISNTISHPREECFSLLDWVHLLKEKGNMMDLVDRRLGEDFNRDEVMVMINVANLCTSLSPMLRPTMSSVLNMLEGRTIVQEVKSDTSKVLDDKKFEVMRQYFQERGENNIIESQIQSIAIDESHALIYDTDSFQRENIN. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07957 667 Gene3D Phosphorylase Kinase; domain 1 293 401 - -
Seca3g07957 667 CDD STKc_IRAK 332 603 - -
Seca3g07957 667 Gene3D - 55 251 - -
Seca3g07957 667 SMART serkin_6 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07957 667 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 57 253 - -
Seca3g07957 667 Gene3D Transferase(Phosphotransferase) domain 1 402 627 - -
Seca3g07957 667 Pfam Malectin domain 59 248 IPR021720 -
Seca3g07957 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Seca3g07957 667 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 295 401 - -
Seca3g07957 667 Pfam Protein kinase domain 328 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07957 667 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 30 631 - -
Seca3g07957 667 SUPERFAMILY Protein kinase-like (PK-like) 310 604 IPR011009 -
Seca3g07957 667 ProSiteProfiles Protein kinase domain profile. 326 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07957 667 FunFam Putative LRR receptor-like serine/threonine-protein kinase 402 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07957 Seca-Chr3 201211032 201216949 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07957 45 653 Receptor kinase-like Gene Family AT1G53420 54.397 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07957 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07957 - - lang:109352857 919.457