Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07955 ATGATGAGTGCCTTCTTCCCTCAATTTCCCCTTCTTTTTCTACTCCCTTTTTGCCTTGCAATATCATTTGCTTTTGGAGCCACTCTGCACAAAGATGAAGTTGAATCAGTGCAAGCTCTGCAAGACATAGCTAGCACGATTGGGAAAGAGAATTGGAACTTCAGTGTGGATCCATGTAACTGGACATCCCCAACTCAATTGCAAGGATCAGAAAATGCTGTGACTTGCAATTGTTCTTTCGCCAATCACACCGTTTGCCATGTTGTCAGCATTGTTTTGAAAGCTCAAAATCTTTCGGGTAGTGTCCCACCGGAGCTTGCCAGGTTGCCTCATCTCCAAGAAATTGATTTCACCCGCAACTACCTTAATGGTACAATCCCTAAACAATTGGCCACCTTAAATCTTGTCAACATTTCCTTTTATGGAAACCGCCTAACGGGTCCAATCCCAAAGGAGCTTGGAAACATCACTACTCTCAAAAGTTTGGTATTGGAGTTCAATCAATTATCTGGAAATCTTCCTCCAGACCTGGGGAATCTTACCCAGATTGAAAGACTGCTTCTTACCTCCAACAATTTCACTGGAGAGTTACCTGCAACATTGGCTAGGCTCACTACATTGAAGCATGTTCGAATTGGCGATAATCAGTTCTCTGGAGCAATACCCAATTTTATACAGAGCTGGATAAATCTTGAGACACTCGTGGTACAAGGGAGTGGTTTGAGTGGACCAATTCCTTCTGGAATTTCACTTTTGACAAACCTTTCTGATTTGAGAATTACTGACTTGAATGGATCTGATTCACCTTTTCCACAACTTAATAATATGACAAATTTGGAAACACTAATATTGAGGAGTTGCAATATTAATGGAGCCGTGCCTGAATATCTTGGAAAGTTGACTAGTTTGCAAGTATTAGACCTCAGCTATAACAACCTAAGTGGACTTCCGAGCAGTTTTGATGGTCTACAGAACTTGGATATGCTATTTTTAGCAGGGAATCTTCTCACTGGATCGCTACCTCAGTGGATAGATAAACCAGACTTTGTTGATCTCTCATATAACAACTTCAGCATCAGGAGCGCAGAGCAGCTGACTTGTCAACAGGGAAGCGTGAACTTGTTCGCATCCTCTTTGAATGGAAACAGCTTAGGAAATGTTTCATGTTTGTCAAACATTCAGTGTCCAAAAGAAGTTGCTGACAAATTTCTACTTGTCCCAGCTTCCTATTCTCTCTATATCAATTGTGGTGGAAAGCATATAATTTCTGATGGAAAGGCATATGATGATGACTCAAATGAGACTGGACCTGCAAGATTTCGTCAAACTGGAACGAATTGGGCACTTATCACTTCTGGTCACTTCTTTGATACTAATCGCAGGGACTACTATAATTGGTCTAATACCAGTAACCTTGCAGCAGTGGAAAATGCTGAACTGTACATGGATGCACGTGTTTCTCCCAACACTTTGACTTATTACGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTCCATTTTGCAGAAATAATGTCTACTGATGATAAAACATATAGCAGCCTTGGAAGGCGTGTATTTGACATCTACATTCAGAGAAAGTTGGTGGTTAAGGATTTCAATATTGCAGAAGAAGCAGGGGGTGTAGGTAAAGCAGTCATAAAGAATTTTACTGCTGTTGTTACTAGTAATGCCTTGGAGATCCGCTTATATTGGGCTGGGAAAGGGACAACTTCTATCCCATTTGGTTCAGTATATGGTCCTCTTATATCAGCTATAGCTGTTGATCCTGATAATGCAGACTTTACACCCCCATTGGAAAATGGTAGTAGCATATCTACAGGGGTTGTGGTTGCAATCGTGGTTGCTGGAGCACTTATTATCATCTTGGTGTTAGGTATACTGTGGTGGAAGGGCTGTTTAGGACTTAAAAAACCAGTGGCCAAAGAGCTAAAGGGTTTAGATTCACAAACTGGTTTATTTACCCCACGACAAATCAAAGCAGCAACAAACAACTTTGACAAAACCTTCAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGCGTTCTATCAGATGGCACTATAGTAGCAGTTAAGCAGCTTTCTGCTAAATCAAGACAAGGCAATCGTGAATTCATAAATGAGATAGGCCTGATTTCTGCTTTGCAACACCCTAATCTAGTTAAGCTCTATGGTTGTTGTATGGAGGAGGATCAATTGTTGCTAATATATGAATACATGGAAAACAATAGTCTTGCCCATGCTTTATTCGAAAACGATGACCCTGGGAAAAGTCAATTAAGATTGGATTGGCAAACGAGGAAGAGGATTTGTGTTGGTATTGCCAAAGGTTTGGCTTACCTTCATGAAGAGTCAAGACTAAAGATCGTTCATAGGGACATCAAGGCTACTAATGTATTGTTGGATAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTCAATGAAGAGGACAATACCCACGTGAGCACCAGAATAGCTGGCACTTATGGGTACATGGCTCCTGAGTATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGGAGGAGCAACACCATTAGGCAGCCTATAGGAGAATGCTTCTCTCTTCTTCATTGGGTTCATCTCTTGAAAGAAAGAGGTAATCTAATGGAGCTAGTGGATAAGAGGTTGGGTGAAGACTTCAACAAAGAGGAGGTAATGGTGATGATTAATGTAGCTCTTTTATGCACCAACGTCTCCCCAACGCTCAGGCCAACCATGTCTTCAGTGGTTAGCATGCTTGAAGGTAGAACCATTGTTCAAGAGGTGGTGTCAAACACAACAGAAGCATTGGATGATAAGAAATTTGAGATGATGCGACAGTATTACCAACAGAGAGGAGAAAATAACATAGTTGAGACTCAGAGCCAGAGTGTCCCTACAGATGGCACTTCTATATTTATGTCTAGTACGGATTCTTCTTTTGGGGAAATCAAAAGTTGA 3045 0.4105 MMSAFFPQFPLLFLLPFCLAISFAFGATLHKDEVESVQALQDIASTIGKENWNFSVDPCNWTSPTQLQGSENAVTCNCSFANHTVCHVVSIVLKAQNLSGSVPPELARLPHLQEIDFTRNYLNGTIPKQLATLNLVNISFYGNRLTGPIPKELGNITTLKSLVLEFNQLSGNLPPDLGNLTQIERLLLTSNNFTGELPATLARLTTLKHVRIGDNQFSGAIPNFIQSWINLETLVVQGSGLSGPIPSGISLLTNLSDLRITDLNGSDSPFPQLNNMTNLETLILRSCNINGAVPEYLGKLTSLQVLDLSYNNLSGLPSSFDGLQNLDMLFLAGNLLTGSLPQWIDKPDFVDLSYNNFSIRSAEQLTCQQGSVNLFASSLNGNSLGNVSCLSNIQCPKEVADKFLLVPASYSLYINCGGKHIISDGKAYDDDSNETGPARFRQTGTNWALITSGHFFDTNRRDYYNWSNTSNLAAVENAELYMDARVSPNTLTYYGFCLGNGNYTVNLHFAEIMSTDDKTYSSLGRRVFDIYIQRKLVVKDFNIAEEAGGVGKAVIKNFTAVVTSNALEIRLYWAGKGTTSIPFGSVYGPLISAIAVDPDNADFTPPLENGSSISTGVVVAIVVAGALIIILVLGILWWKGCLGLKKPVAKELKGLDSQTGLFTPRQIKAATNNFDKTFKIGEGGFGPVYKGVLSDGTIVAVKQLSAKSRQGNREFINEIGLISALQHPNLVKLYGCCMEEDQLLLIYEYMENNSLAHALFENDDPGKSQLRLDWQTRKRICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLNEEDNTHVSTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRSNTIRQPIGECFSLLHWVHLLKERGNLMELVDKRLGEDFNKEEVMVMINVALLCTNVSPTLRPTMSSVVSMLEGRTIVQEVVSNTTEALDDKKFEMMRQYYQQRGENNIVETQSQSVPTDGTSIFMSSTDSSFGEIKS. 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07955 1014 Gene3D Ribonuclease Inhibitor 192 265 IPR032675 -
Seca3g07955 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Seca3g07955 1014 Pfam Malectin domain 411 594 IPR021720 -
Seca3g07955 1014 Pfam Protein tyrosine and serine/threonine kinase 679 948 IPR001245 GO:0004672|GO:0006468
Seca3g07955 1014 SUPERFAMILY Protein kinase-like (PK-like) 657 954 IPR011009 -
Seca3g07955 1014 SUPERFAMILY L domain-like 54 342 - -
Seca3g07955 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 409 599 - -
Seca3g07955 1014 Gene3D Transferase(Phosphotransferase) domain 1 750 973 - -
Seca3g07955 1014 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 31 264 - -
Seca3g07955 1014 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Seca3g07955 1014 Gene3D - 408 599 - -
Seca3g07955 1014 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 987 - -
Seca3g07955 1014 SMART LRR_typ_2 323 346 IPR003591 -
Seca3g07955 1014 SMART LRR_typ_2 109 133 IPR003591 -
Seca3g07955 1014 SMART LRR_typ_2 156 180 IPR003591 -
Seca3g07955 1014 SMART LRR_typ_2 300 322 IPR003591 -
Seca3g07955 1014 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 644 749 - -
Seca3g07955 1014 Gene3D Ribonuclease Inhibitor 266 367 IPR032675 -
Seca3g07955 1014 CDD STKc_IRAK 680 950 - -
Seca3g07955 1014 Pfam Leucine rich repeat 277 336 IPR001611 GO:0005515
Seca3g07955 1014 Gene3D Phosphorylase Kinase; domain 1 644 749 - -
Seca3g07955 1014 ProSiteProfiles Leucine-rich repeat profile. 302 324 IPR001611 GO:0005515
Seca3g07955 1014 SMART serkin_6 674 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07955 1014 ProSiteProfiles Protein kinase domain profile. 674 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07955 1014 FunFam Putative LRR receptor-like serine/threonine-protein kinase 750 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07955 Seca-Chr3 201088541 201107058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07955 21 982 Receptor kinase-like Gene Family AT1G53420 53.759 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07955 PK_Tyr_Ser-Thr 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07955 - - gmx:100798947 1405.19