Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07949 ATGAAGATTCAGTGCAACGTTTGTGAAGCTGCAGAGGCTAAGGTTCTTTGCTGTGCGGACGAAGCAGCACTATGCTTGGAATGTGATAAGAAGGTTCATGCAGCAAACAAGCTTGCCAGCAAGCACCAGAGAGTTCCTCTTTCAATCTCTGCCTCTCACATGCCCAAGTGTGACATTTGTCAGGTAGAAACTATTGGTTATTTCTTCTGTCTAGAGGATCGGGCTTTACTATGCAGGAATTGCGATGTGGCAATACACACAGCAAATGCCTTTGTTTCTAGTCATCAAAGGTTTCTGCTTACTGGTGTAAGAGCAGGCCTTGAAGCTACTGAGCCTGGTGCTTCCTCATCTTCTGCGAAGTCACATTCTGAGGAGATAATGTCTGATGTTAAATCTTCTTCCATTTCTAGAAATGTTTCTTCCATGCCCCAGCCACCCACTTTCAATGAAGCGTTACCAATTCAAGCTGTAATGGGAGAGTTTCCCCCAACTAAGGTGTCATATGGTGGTGGTTCTACTGCTGGAAGCATCTCACAGTGGCCCATTGAAGAATTTCTTGGAATAAATGAATTCAGTCAGAATTATAATTACATGGATGGATCGTCCAAGGCTGACAGTGGTAAGCTTGGGGATTCAGATTCTTCTGTTTTAAGATCTAATGAAGAGGAAATGGATGATGATGACCTTTTGGGGCGCGTTCCAGATTCATCCTGGACAGTTCCTCAGATCCCTTCCCCTCCTACAGCTTCAGGGTTATATTGGCCAAAAGACCCTCAGTGTACATCTGACAATGCTATGTTTGTTCCTAACATACACATTTCTCGCATGCGACAACCCAACCATACTCAGAATAATTCAAAATTTTCAAAACGGCGGAGGCAACGGTGA 888 0.4414 MKIQCNVCEAAEAKVLCCADEAALCLECDKKVHAANKLASKHQRVPLSISASHMPKCDICQVETIGYFFCLEDRALLCRNCDVAIHTANAFVSSHQRFLLTGVRAGLEATEPGASSSSAKSHSEEIMSDVKSSSISRNVSSMPQPPTFNEALPIQAVMGEFPPTKVSYGGGSTAGSISQWPIEEFLGINEFSQNYNYMDGSSKADSGKLGDSDSSVLRSNEEEMDDDDLLGRVPDSSWTVPQIPSPPTASGLYWPKDPQCTSDNAMFVPNIHISRMRQPNHTQNNSKFSKRRRQR. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07949 295 CDD Bbox1_BBX-like 56 100 - -
Seca3g07949 295 CDD Bbox1_BBX-like 5 47 - -
Seca3g07949 295 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca3g07949 295 MobiDBLite consensus disorder prediction 273 295 - -
Seca3g07949 295 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 278 - -
Seca3g07949 295 FunFam B-box zinc finger protein 22 1 94 - -
Seca3g07949 295 Gene3D Classic Zinc Finger 1 94 - -
Seca3g07949 295 MobiDBLite consensus disorder prediction 220 244 - -
Seca3g07949 295 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Seca3g07949 295 SMART bboxneu5 52 100 IPR000315 GO:0008270
Seca3g07949 295 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca3g07949 295 MobiDBLite consensus disorder prediction 111 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07949 Seca-Chr3 200635346 200639911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07949 1 294 C2C2-CO-like Transcription Factor Family AT1G78600 46.988 3.47e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g07949 zf-B_box 2.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07949 - - gmx:100808889 449.899