Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07948 ATGACAGATTTGCATGAAGATTCCACCGTAATTAGATGTGATAATAGATTTGAAAGTGCTCTTGCAATGGACCATCTCAATAATGGACTACCATTAGAACCTTCCTTAGAGTCGTATGAAGGAATGAAGTTTGCATCAATTGAAGATGCCAAGAACTATTATACAATGTACGCAAAGAACAAAGGTTTTAGCTTTCGCATGGGTCATGTTACTAAATTAAGAGCAAATGGTATGATAATTGACCAAGAGATCCTTTGTTCAAAGGACGGGTTTCGAAGAAAAAAATGTTGA 291 0.3574 MTDLHEDSTVIRCDNRFESALAMDHLNNGLPLEPSLESYEGMKFASIEDAKNYYTMYAKNKGFSFRMGHVTKLRANGMIIDQEILCSKDGFRRKKC. 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07948 96 Pfam FAR1 DNA-binding domain 52 95 IPR004330 -
Seca3g07948 96 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 22 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07948 Seca-Chr3 200625125 200625415 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g07948 FAR1 1.8e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07948 - K17604 psat:127129645 127.872