Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07938 ATGCCAGGGAACAAGTACAACGGCGATTCTAATAACCACATACCAGATCGTGTTGAACGGCTTTTGAGGGATAGGGAGTTGAGGAAAAACACGAGGGCGATTTTGAATGAGTCGAGTGATAACAGTAACAGTAATAATGAAGGTTTAGAGCAGGAGCAGAGGTTGAAGGAAGAGGAAAAGTTAGGGGAAGTTGAAGGGGTGGGAGGGGGAAGGGTTGGGGAAGGATGTGAGAGAGGAGATGGGAAGCCTGTGAGACAGAGGCTTTTGGTGGTGGCAAACAGGTTGCCAGTGTCAGCAATTAGGAAAGGTGAGGATTCATGGTCTTTGGAGATAAGTGCTGGTGGCCTCGTGAGCGCCCTTTTAGGTGTGAAGGAGTTTGAAGCAAGGTGGATAGGTTGGGCTGGTGTTAATGTTCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCATTGGCTGAAAAGATGTGCATCCCCGTATTTCTTGATGAAGAGATTGTTCATCAATACTATAATGGCTATTGCAACAACATCTTGTGGCCCCTTTTCCATTACCTTGGACTACCACAAGAAGACCGCCTTGCCACCACACGTAGTTTTCAGTCTCAGTTTGCAGCGTATGAGAAAGCAAATGAAATGTTTGCTGAAGTTGTGAACAGGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCTTAAAGAAATACAACAGCAAAATGAAAGTTGGATGGTTTCTCCACACTCCATTCCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCGGAGCTCCTGCATTCTGTTCTTGCAGCTGATTTAGTTGGCTTTCACACCTATGATTATGCAAGACATTTTGTTAGTGCTTGTACTCGCATCCTTGGACTTGAGGGTACACCTTATGGGGTTGAGTATCAAGGGAAGCTGACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCAGAACGATTTATACGTGCACTTGACCTTCCTCCAGTACAGGAGCACATGAAAGACTTACAAGAAAGATTTAAAGGAAGAAAGGTAATGTTAGGCGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAAATGCTTATTGGCGTGATAAAGTCGTTTTGCTTCAAATCGCTGTGCCAACAAGAACAGATGTTCCTGAGTATCAGAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATTAATGGCAGATTTGGATCATTGACTACTGTTCCTATACATCACCTGGATCGCTCTCTTGACTTTTATGCACTATGTGCTGTGTATGCTGTTACTGATGTAGCACTAGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAGGAGAAAAAGAAAGGGGTTCTTATTCTTAGTGAATTCGCTGGTGCAGCACAGTCTCTTGGTGCTGGGGCAATTCTTGTCAACCCCTGGAACATTACCGAAGTTGCGGCTGCAATTGCCAGGGCTCTGAATATGCCATCTGCAGAAAGAGAGAAGAGACATAAGCATAATTTTCTTCATGTAAAATCCCATACTGCTCAAGAATGGGCAGGAACTTTTGTAAGGTATGTGTATTATGATTTTCAGGAAAGATCCACATTACCTTATGAATCTTTGAATATTTGCAGCGAACTAAATGATACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCACCCCGACTACCAACCAAGACTGCAATTGAACGTTATCTGCAGTCAACTAATAGATTGCTCATTTTGGGGTTGAATGGAACTTTAACTGAACCGGTCGAGAAAACAGGTGATCAGATTAAGGAAATGGAACTTAAGGTGCATCCAGAATTGAGACAACCCTTGATGGCACTTTGCAGTGATCCAAATACCACCATAGTAGTGCTCAGTGGAAGTGGTAGAAAAGTCCTAGATGATAACTTCAAAGAATATGATATGTGGTTGGCAGCAGAGAATGGGATGTTTTTACACCCTTCAAAGGGCGAATGGATGACAACAATGCCAGAGCATCTTAATATGGAATGGGTTGACAGCGTGAAGCATGTTTTTGAGTACTTCACAGAAAGAACACCTCGGTCACACTTTGATTTTGAAGAAAGGGAAACTTCACTTGTATGGAATTACAAATACGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCTATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACAAAGGGAGCAGCTATTGACCGCATCCTGGGTGAGATAGTCCACAGTAAATCCATGACATCACCAATTGATTATGTTCTTTGCGTAGGACATTTTCTGGGGAAGGATGAAGATATTTATGCCTTTTTTGAGCCGGATCTTCCTTCTGTTGGTGTGGGTTTTCCGCGAAGTAAGGTAACAACAGATGCAGTTAAGTATCCTGTTGAGAGGAGACCGTCTCCGAAGATCCCAGCTTGTGGTAAAAATGGACCAAAGTCATCTCAAAATAAGGCACCGAAGCCAGTGTCAAATTCTGAGAAGAAAACAAATAATCATGTCTGCAGTGCACCACGACGCCCTGCTCCTGAGAAGATATCATGGAACGTCCTTGACCTTAAGAAAGAGAATTACTTCTCATGTGCTGTTGGGAGAACTCGAACAAATGCACGGTATACACTTGGGTCATCAGATGATGTTGTTACATTTCTCAAGGAACTGGCGGATGCATCATAG 2829 0.4316 MPGNKYNGDSNNHIPDRVERLLRDRELRKNTRAILNESSDNSNSNNEGLEQEQRLKEEEKLGEVEGVGGGRVGEGCERGDGKPVRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKMCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYEKANEMFAEVVNRHYEEGDVVWCHDYHLMFLPKCLKKYNSKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIRALDLPPVQEHMKDLQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTTVPIHHLDRSLDFYALCAVYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIARALNMPSAEREKRHKHNFLHVKSHTAQEWAGTFVRYVYYDFQERSTLPYESLNICSELNDTVIEAQLRTRQVPPRLPTKTAIERYLQSTNRLLILGLNGTLTEPVEKTGDQIKEMELKVHPELRQPLMALCSDPNTTIVVLSGSGRKVLDDNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFDFEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCVGHFLGKDEDIYAFFEPDLPSVGVGFPRSKVTTDAVKYPVERRPSPKIPACGKNGPKSSQNKAPKPVSNSEKKTNNHVCSAPRRPAPEKISWNVLDLKKENYFSCAVGRTRTNARYTLGSSDDVVTFLKELADAS. 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07938 942 Gene3D Glycogen Phosphorylase B; 334 537 - -
Seca3g07938 942 CDD GT20_TPS 87 549 IPR001830 GO:0003824|GO:0005992
Seca3g07938 942 SUPERFAMILY HAD-like 605 939 IPR036412 -
Seca3g07938 942 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 86 549 - -
Seca3g07938 942 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 695 777 - -
Seca3g07938 942 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 82 940 IPR001830 GO:0003824|GO:0005992
Seca3g07938 942 MobiDBLite consensus disorder prediction 29 79 - -
Seca3g07938 942 Pfam Trehalose-phosphatase 628 828 IPR003337 GO:0003824|GO:0005992
Seca3g07938 942 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 87 549 IPR012766 GO:0003825|GO:0005992
Seca3g07938 942 Pfam Glycosyltransferase family 20 87 551 IPR001830 GO:0003824|GO:0005992
Seca3g07938 942 Gene3D - 695 777 - -
Seca3g07938 942 MobiDBLite consensus disorder prediction 861 883 - -
Seca3g07938 942 Gene3D - 628 821 IPR023214 -
Seca3g07938 942 CDD HAD_TPP 606 832 - -
Seca3g07938 942 MobiDBLite consensus disorder prediction 34 49 - -
Seca3g07938 942 MobiDBLite consensus disorder prediction 50 65 - -
Seca3g07938 942 Gene3D Glycogen Phosphorylase B; 80 333 - -
Seca3g07938 942 MobiDBLite consensus disorder prediction 849 891 - -
Seca3g07938 942 FunFam Alpha,alpha-trehalose-phosphate synthase 629 700 - -
Seca3g07938 942 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 334 536 - -
Seca3g07938 942 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 79 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07938 Seca-Chr3 200228650 200242486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07938 1 942 Trehalose Biosynthesis Gene Families AT1G78580 75.286 0.0 1451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07938 K16055 - gmx:100797320 1620.52