Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07928 ATGGACCTCAACGATCTTCCTCCTATCAAGAGGCTCAGACTCATTCAACAACAACAACAAAACAGTTCCAGTTCCAGTTCCAGTCCTAGTCCCTGCTCACCCTTACCTACGAAGAAACGCAAGGAGTCTCGAAACTCCACGTTTCTTCATAATCCACCACCATCGCCTCCTAAACCCACTTTTTATTCTCTCCCCGCTAAGAAAAGAGTATGCGCACTCCATCCTCATTACCAAATCGACGCCGTTTCTCCCTTCGACCTAAACGAACCCCCAACACCCGAAAAACCCCAACAAGAAGAAGATGAAGAAAACGCAACTGCCACCGAAAACGACGACGACGGGATTGTATGCTGTGTGTGCCAGAGCACCGACGGTGACCCTGCGGATCCAATCGTTCTCTGCGACGGTTGCGACCTCATGGTGCACGCTTCCTGCTACGGCAACCCGCTCTGCAATGGCGTCCCTGAAGGCGACTGGTTCTGCGAACGGTGTCGTTTTGGCATCGGTGCTGATGTTGCGTGTTCGCTGTGTCCGGAGAAGAAGGGGGCAATGAAACGCACCACGGAGGAAGGTTCTTGGGCGCATCTGGTGTGCGCGCTGTTTGTGCCTGAGGTGTTTTTTTTGGATCCTGAAGGAAGGGAAGAGATTGATTGCTCTAAGGTTCCACAGAAGAACTGGTTGCAGAAGTGCTATGTTTGTGAGTGCTGTGATGGTTGTGCTTTGGTTTGCTCTGAGCCAAAGTGTGGTTTGGCTTTTCATGTTACTTGTGCGCTCAAAGAGGATCTCTTCATCGAGTATAAGGAAGGGAAGAAAGGTGCTACCATTGTTGCTGGCTTCTGCAAAACCCACACAGAACTATGGGAAAAGCAACAGCTATCTGGGAAGTACAAAATTGTGGCCGTTGAAGATAAGAAGCAGCTAAAATGA 927 0.4995 MDLNDLPPIKRLRLIQQQQQNSSSSSSSPSPCSPLPTKKRKESRNSTFLHNPPPSPPKPTFYSLPAKKRVCALHPHYQIDAVSPFDLNEPPTPEKPQQEEDEENATATENDDDGIVCCVCQSTDGDPADPIVLCDGCDLMVHASCYGNPLCNGVPEGDWFCERCRFGIGADVACSLCPEKKGAMKRTTEEGSWAHLVCALFVPEVFFLDPEGREEIDCSKVPQKNWLQKCYVCECCDGCALVCSEPKCGLAFHVTCALKEDLFIEYKEGKKGATIVAGFCKTHTELWEKQQLSGKYKIVAVEDKKQLK. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07928 308 CDD PHD_BRPF_JADE_like 116 164 - -
Seca3g07928 308 SUPERFAMILY FYVE/PHD zinc finger 106 180 IPR011011 -
Seca3g07928 308 MobiDBLite consensus disorder prediction 13 34 - -
Seca3g07928 308 MobiDBLite consensus disorder prediction 82 109 - -
Seca3g07928 308 SMART PHD_3 116 165 IPR001965 -
Seca3g07928 308 SMART PHD_3 229 284 IPR001965 -
Seca3g07928 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 286 IPR013083 -
Seca3g07928 308 MobiDBLite consensus disorder prediction 1 61 - -
Seca3g07928 308 ProSitePatterns Zinc finger PHD-type signature. 117 164 IPR019786 -
Seca3g07928 308 Pfam PHD-zinc-finger like domain 173 283 - -
Seca3g07928 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 169 IPR013083 -
Seca3g07928 308 PANTHER PHD FINGER PROTEINS 39 284 - -
Seca3g07928 308 ProSiteProfiles Extended PHD (ePHD) domain profile. 171 284 IPR034732 -
Seca3g07928 308 ProSiteProfiles Zinc finger PHD-type profile. 114 167 IPR019787 -
Seca3g07928 308 CDD ePHD 174 283 - -
Seca3g07928 308 Pfam PHD-finger 117 165 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07928 Seca-Chr3 199819996 199822009 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07928 35 306 C2H2 Transcription Factor Family AT3G14740 50.489 5.60e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g07928 zf-HC5HC2H_2 1.9e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07928 K11380 - gmx:100802652 382.874