LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g07909	ATGAAATTTAGAGTTAATAACTTGCAGGACGTTAAAGAGATGGAGTTTTTCACTGAGTATGGGGATTCCAACAGATACAAGATTCTTGAGATTATAGGGAAGGGTAGCTATGGAGTTGTTTGTGCAGCAATTGACACGCACACTGGGGAAAAAGTTGCAATAAAGAAGATTCATGATGCCTTTGAGCATATTTCTGATGCCATTAGAATCCTTCGTGAAGTCAAGTTGCTAAGGCTTTTAAGACACCCTGATATTGTGGAGATTAAGAGAATCATGTTACCACCTTCAAAGAGGGAGTTTAAAGATATTTATGTAGTCTTTGAGCTCATGGAGTCTGATCTTCATCAAGTCATCAAAGCTAATGATGATTTGACCCGTGAACACCATCAGTTTTTCCTTTATCAGATGTTACGTGCGTTGAAGTATATGCATACAGCTAATGTGTATCACAGAGATCTTAAACCCAAGAATATATTGGCAAATGCAAACTGCAAGCTCAAAGTTTGTGATTTTGGGCTGGCTAGAGTTGCATTCAATGATGCCCCAGCTACAATATTTTGGACTGATTATGTTGCTACAAGATGGTATAGAGCACCAGAGCTGTGTGGATCATTTTTTTCTAAGTATACACCAGCAATTGATATATGGAGCATTGGATGCATATTTGCCGAGGTGCTGATGGGAAAGCCATTGTTTCCCGGTAAAAGTGTTGTGCATCAATTAGATTTGATTACGGATCTTCTTGGGACACCATCATCTGAAACTATTACAGGAGTTCGAAATGATAATGCAAAGAAGTACTTAATGGGAATGCGGAAGAAATCTCCTGTGCCATTTGAGCAGAAATTTCCAAATGTTGATCCATTGGCACTTCGCCTTCTGCAAAGGCTTCTAGCATTTGATCCAAAGGATCGACCAACTGCTCAAGAGGCACTGGCTGATCCATACTTCAAGGGCTTGGCCAAAGTCGAGAGAGAACCTTCGTGTAAGCCAATTTCAAAATTGGAATTTGAGTTTGAGAGGAGAAGGATGACAAAGGATGATGTTAGAGAACTAATGTATCGGGAAATACTGGAGTATCATCCTCAACTACTCAAAGATTACATGAATGGAACTGAAGGCGCAAACTTCCTCTATCCTAGGTCCAACATACGCTTCTGTTTATTAAACATTGTGCCCGTTGCCTTTTTGACTGCAATAGATCAATTCAGAAAACAATTTGCTTATCTTGAGGAAAATCATGGTAAAAGTGGGCCAGTGCTTCCTCCAGAAAGAAAGCATGTCTCCCTTCCAAGGTCCACTGTTCACTCTAGTACAGTTCCTCCTAGTACCCAGTCAACCCCTATTTTATATGAGAACAAACAAATTGTAGAAGAGGCATCTAAGAGTTTGAGAGCAGCAGGATCAAATCCTGGAAATCAATCAAGGGGTGTACAACCTCCACCACGGGTGCCAACAGCTAAACCAGGGAAAGTTGTAGGGCCAGTTCTACACTATGAAAATCAGAGAATCATAAAAAATTCTAATAACCCCAGGATCGTTTACCAAAATACTCCTCAAGCAGTTTCGATGCACAGTCTCTTTAGGGTTCATCCCCCAAACCCAAAGGCTACATCAGATATACACAAGGACTTTTCACAAGGCAAGAATCAACTCCCATCTCAGCAGTCTAACTTACAAGCCAGACGAACCACTGATCACAACACCAACCCATACTGCCAACAAGGCAAGAACAATAACGTAAATGAACCTGTAACAGCCATTGATGCAAAACTGCTGCAGGCACAATCTCAATTTGGCGCAGTTGGTGCTGCAGCAGTAGCCGTTGCCAATCACAGTCACAGGTATTCAAGGGGCATTCAGTATGGTTTGTCATAG	1878	0.4127	MKFRVNNLQDVKEMEFFTEYGDSNRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKIHDAFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPATIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKSVVHQLDLITDLLGTPSSETITGVRNDNAKKYLMGMRKKSPVPFEQKFPNVDPLALRLLQRLLAFDPKDRPTAQEALADPYFKGLAKVEREPSCKPISKLEFEFERRRMTKDDVRELMYREILEYHPQLLKDYMNGTEGANFLYPRSNIRFCLLNIVPVAFLTAIDQFRKQFAYLEENHGKSGPVLPPERKHVSLPRSTVHSSTVPPSTQSTPILYENKQIVEEASKSLRAAGSNPGNQSRGVQPPPRVPTAKPGKVVGPVLHYENQRIIKNSNNPRIVYQNTPQAVSMHSLFRVHPPNPKATSDIHKDFSQGKNQLPSQQSNLQARRTTDHNTNPYCQQGKNNNVNEPVTAIDAKLLQAQSQFGAVGAAAVAVANHSHRYSRGIQYGLS.	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g07909	625	ProSitePatterns	Protein kinases ATP-binding region signature.	32	56	IPR017441	GO:0005524
	Seca3g07909	625	SUPERFAMILY	Protein kinase-like (PK-like)	22	321	IPR011009	-
	Seca3g07909	625	Gene3D	Transferase(Phosphotransferase) domain 1	112	340	-	-
	Seca3g07909	625	ProSiteProfiles	Protein kinase domain profile.	26	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g07909	625	MobiDBLite	consensus disorder prediction	465	490	-	-
	Seca3g07909	625	Gene3D	Phosphorylase Kinase; domain 1	41	363	-	-
	Seca3g07909	625	Pfam	Protein kinase domain	26	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g07909	625	MobiDBLite	consensus disorder prediction	432	450	-	-
	Seca3g07909	625	SMART	serkin_6	26	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g07909	625	MobiDBLite	consensus disorder prediction	466	480	-	-
	Seca3g07909	625	ProSitePatterns	MAP kinase signature.	61	164	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Seca3g07909	625	FunFam	Mitogen-activated protein kinase	341	363	-	-
	Seca3g07909	625	FunFam	Mitogen-activated protein kinase	15	120	-	-
	Seca3g07909	625	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	25	362	-	-
	Seca3g07909	625	CDD	STKc_TDY_MAPK	25	362	-	-
	Seca3g07909	625	FunFam	Mitogen-activated protein kinase	112	340	-	-
	Seca3g07909	625	MobiDBLite	consensus disorder prediction	547	579	-	-
	Seca3g07909	625	MobiDBLite	consensus disorder prediction	414	450	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g07909	Seca-Chr3	199412156	199418676	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g07909	9	600	MAP Kinase Gene Family	AT1G53510	67.317	0.0	783

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Seca3g07909		Pkinase	1.4e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g07909	-		-	gmx:100800878	956.822