Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07897 ATGGGCACTGATGCAATAAAGGATTTGAGATTGGAAGTTGAAGTAAAGGAGGGAACTTTTTCTATCTGCTTTTGGGTTTACTTGACGAGCTCCACTACATTCCCTGCTACTATTATCCAACAGGTTTACTCCGATATATCCGAAAGTGCTCCTTTTCTTGTTATTAATGATGACAAGAGAATCAATATTTTACCAGTTCTTGCCTTACATGAAGAAGCTCCTGATACTGGCAATATAAATTCCTGGGCAGAAGTTCCACATGCAACTGCTGATTTCGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAAGTCATATCCACCTTCAGATTAATGGAGAGATTGTAGGAGATAAGTCTTTGTCTTCCTTATTAAATAAGGAAACCGATTCAAGTAATTTGAAGAAAATAACTTTGGCCAATGTTGGTGGAGATGGAAATAGTGTGCAGGGTTATGTGCACAATTTTGAAGTATTCCCTATTGCTTCTTCTATTAAGGATCACCATTTAAAGAACCCTCCTTTGAAGTTATCAATTGATGAATCATCTGCATCTGAGATTGAAGAAGAAAGTGATGGTGTTTGGAGCATTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTTTGGATGTTGTTCTATCAGATGCCTCCGGACAGCCTGTAGATCAGGAGAATGAGCAGGTTTTTGCTTCACTTTTGTACTCTGACACACGGGCTCCAGTGGAGAATACAACTGATGAAGAAGCACCCCTTTTGGCTAGCTATGATGGAATTGAATTTTCTTCGAGTGAAAGACCAAGTAAACTTTTACTGGGGCGTGCATCTTTTAAGCTCAAGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCTTCATCAGATTTTTTATTCCAAAACTAGGAAATTATCCTTTTCTTGAGACATACACCCGTCCAATTCGATGCATCTCTAGGAGCCGTAACACAAGATTATCCACTTTGGTGTGGAAAAGGCCAACTCCTGCCCTTCACCAACTTAGTTTGTCGCAGTCTTCACCAATGGATGATGGGTCATTAGAACATCTGCATTCTGGTCATGAAACAAAAGTCAATCCATTGATGAAGCGGTTTAGAGTTGGACATGACAAGATATCTGTATCAGTGAAGACTGACCCCACCACCTTAGTGCAACCTGATGAGGAATGTAATTCTCATATCTGGACTGCTAATCAGGTTGAGAATGGATTTCCAGCAACCTTGGACGGCAGGCCTGCTAACTTTGAAGAAGTAGATGACTCTCCATCTGATTCAGAGAGTATAGGGGAGAGAAATTCACCTTCAAATAGTATGGCAAGTAGAAGATATCCAATATCTGATATGACAATTTTCAAATACTGCCTGGCAGGTTTGGCTGAGAGATCTCTCATGCTTAAGGAAATTGCTACCTCTGCTTCTGACAAAGAAATTTCAGAGTTGGCTCATCATGTATCACTCTATTCAGGATGTTCACACCATGGAAACCAAATTTTAATTGCCAAGAGATTGATAGAAGATGGAACTAATCTTTGGAAGGTGATGTCTCCAAACAACCACCACATTTCATGGGAGACAGCAGTCTATGAGATTGAAGAGCAATTCATGAAGATTGCTTCTTGTGGTTCCAGATCTCTCTCACATCAGGTCCTATTTCTATGTTTTGCTTCTTAA 1704 0.402 MGTDAIKDLRLEVEVKEGTFSICFWVYLTSSTTFPATIIQQVYSDISESAPFLVINDDKRINILPVLALHEEAPDTGNINSWAEVPHATADFEFPLEKWVHVGCEVCPSHIHLQINGEIVGDKSLSSLLNKETDSSNLKKITLANVGGDGNSVQGYVHNFEVFPIASSIKDHHLKNPPLKLSIDESSASEIEEESDGVWSIVGGKASCRRNFSLDVVLSDASGQPVDQENEQVFASLLYSDTRAPVENTTDEEAPLLASYDGIEFSSSERPSKLLLGRASFKLKISQLSSKCDNRLFFIRFFIPKLGNYPFLETYTRPIRCISRSRNTRLSTLVWKRPTPALHQLSLSQSSPMDDGSLEHLHSGHETKVNPLMKRFRVGHDKISVSVKTDPTTLVQPDEECNSHIWTANQVENGFPATLDGRPANFEEVDDSPSDSESIGERNSPSNSMASRRYPISDMTIFKYCLAGLAERSLMLKEIATSASDKEISELAHHVSLYSGCSHHGNQILIAKRLIEDGTNLWKVMSPNNHHISWETAVYEIEEQFMKIASCGSRSLSHQVLFLCFAS. 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07897 567 MobiDBLite consensus disorder prediction 417 451 - -
Seca3g07897 567 Pfam Concanavalin A-like lectin/glucanases superfamily 15 167 - -
Seca3g07897 567 Gene3D - 8 172 - -
Seca3g07897 567 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 19 560 IPR001217 GO:0003700|GO:0006355|GO:0007165
Seca3g07897 567 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 167 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07897 Seca-Chr3 198805648 198813592 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Seca3g07897 Laminin_G_3 3.6e-08 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07897 - - gmx:100803169 910.983