Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07889 ATGTGCTTTTTGATGGATCCTCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCATAGAGTTGATGGTATTGATACTCATGATCATTATGCCAATAGGAACACAGTTTTCTTTGATATTAACATAAAGGGTCTAGATGGTATTCAAGGTCCTGTATATGTGGGGACAGGATGCGTTTTTAGGAGGCGAGATTTTTATGGTTATAATCCTCCTAGGAGGCAAGATATGTTTCACACACACACACACATATGA 255 0.3922 MCFLMDPQTGKKVCYVQFPHRVDGIDTHDHYANRNTVFFDINIKGLDGIQGPVYVGTGCVFRRRDFYGYNPPRRQDMFHTHTHI. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07889 84 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 71 IPR029044 -
Seca3g07889 84 Pfam Cellulose synthase 1 77 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca3g07889 84 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07889 Seca-Chr3 198472727 198473094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07889 1 73 Cell Wall Biosynthesis AT5G17420 83.562 3.48e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07889 K10999 - gmx:100799375 147.902