Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07875 ATGATCCAAGAGGATTCAACAAAGAACGAAAATGAAGATATTAAGAATATAGTTGAACATGTGACTCTTGTGCTAGACAAGAGAGACATATTCGTTGCTGACCATCCCGTGGGAGTAGAATCTCGTGTGCAAGATGTGGTTCAACTATTGAACAACCAACAATCAAAATATCCTCTACTATTAGGGATTTGGGGTATGGCAGGGATTGGTAAAACAACCATTGCCAAAGCCATTTATAATCAAATTGGTCCCCATTTTGAGGACAAGAGCTTCCTCCTTAATATCCGGGAAGTTTGGAAACAAAATAATGGCCAAGTTTCTTTACAAGAGAGGCTTCTTTTTGATATCTACAAAACAATAAAAATAAAGTTAGATACAACTGAAGCAGGAAAAATGATATTAAAAGAAAGGCTTCATCATAAAAGGATACTTCTTATACTTGACAATGTGAATAACTTGGAGCAGCTAAATGCATTGTGTGGAAGTCGTGAATGGTTTGGTTTAGGTAGCAAAATAATCATAACGACAAGAGATAAACATCTACTTAGGATGATTGGAGTTGACCATGTATATAAAGTGGTAGAACTAGAGCAAAGTGAATCTGTTGAGCTTTTTAGTTGGCATGCGTTCAAGCAAGGATGTGCTAAAGAAGACTTTGTTGAACTTTCTCAAGAATTAGTTGCTTATTCTGGTGGATTACCATTTGCTCTAGAAGTCCTTGGGTCCATTTTGTTTGAAAAGGATAATGTGATATATACATTAAATAGATCAATACAATTCGCAGCACTTCAAATAAGTTTCCTTGAAGACAAAAGCCTTGTAACCATTGATGAGAATAACAAACTTGGAATGCATGTTCTATTGCGAGACATGGCAAGGGAAATTATTATGAAGGAATCACAAATTAAACCTGAGCCAAGGATCTATGATGTATTCTTGAGTTTCAGAGGGGAAGACACCCGTGCATCATTCACTTCACATCTTTATGTCGCTCTTCAAAATGAAGGTATATATGTTTTCAGGGATAATGATGAGATTCAAAGGGGAGAGCATATCTCAGTCTCACTATTGCAAGCAGTTAGAAGGTCTAGAATATGTGTCATTGTTTTGTCAAGAAACTATGCTAATTCAAGATGGTGTATGCAAGAGTTGGAGAACATAATGGAAAGTCGTAGAACCACGGGTCTGGTGGTTGTGCCAGTGTTTTATGGAGTTGATCCATCAGATGTACGTCATCAAACAGGTAAATTTGGAGAAGCTTTTGAAGATCTTATTACAAGTGTCTCAATGGATGAATATAGGGTAAGGAATTGGAGGTTAGTGCTCCTTGAAGTTGGTGGCATAGCAGGCTTTGTCTTCATAGATTCCAGGAATGAAAGTGAGGATATCAAGAATATTGTTGAGCGTGTTACCCATTTGCTAGATAGGACAGAACTATTCGTTGCTGAACATCCTGTAGGAATAGAATCTCGGGTGCAAGTTGTGACTAAACTATTAAACATGCAACAATCAAAAGATGTTTTACTTTTGGGGATTTGGGGGATGGGAGGTATTGGTAAAACAACCATTGCCAAAGCCATTTATAATCAAATTGGGAGCAATTTTGAGGGTACGAGTTTCCTCCCAAATATCAGGGAAGTTTGGGATCAAAAGGATACTAACAGAGTTTCTTTACAACAACTTGTTCTTTATGATATTTTCAAAACAACAACATTGAAGATACAAAACATTGAATCAGGGAAAAATATATTAAAGAAAAGACTTTCCCAAAAAAAGGTACTTGTTGTGCTTGATGATGTGAATGAATTAGACCAACTAAATGCTTTGTGTGGAAGCCGTGAATGGTTTGGTCCAGGGAGTAGAATAATAATCACAACAAGAGATAAACGTCTTATTAGATTGCGTAGAGTTGACCATGTATATAGAATGCAAGAAATGAACGAGAGTGAATCTCTTGAGCTTTTTAGTTGGCACGCATTTAAGGAAGCAATTCCAAGAGAAGATTTTGCTACACATTCAACAAACGTGGTTTCTTATTCTGGAAGATTGCCACTAGCACTTGAAGTCCTTGGGTCGTGTTTGTTTGACAGGGGAATAACAGAGTGGGAGAGTGTGTTGAAGAAACTCAAAAGAATTCCAAATGATCAAGTTCAGAAGAAGCTGAAAATAAGCTATGATGGTTTAAGTGATGATACTCAGAAAGAAATATTTCTTGACATTGCTTGTTTCTTTATTGGGATGGATCGAAATGATGTTATACATATATTAAATGGTTGTGGACTTTATCCAGAAATTGGGATTAGTGTCCTTGTAGAGCGAAGCCTTGTAACTGTTGACAATAAAAACAAGCTTGGAATGCATGATTTGTTGAGAGACATGGGAAGAGAAATAGTTCGTGAGAAATCACCCAATGAGCCTGAGGAGCGTAGTAGGTTATGGCTTCGAGAGGACGTGCTTGATGTATTGTCAAAGTATAAGGGGACAAAAGCTGTCAAGGGATTGAGTTTGAGATTGACAGGAAAAAATACAATTTGTTTGAGTACCAAAGCATTTGAGAAGTTGAATAGACTCAGATTACTTCAACTTGCTGGTGTGAGACTTAACGGAGATTTTAAGCATCTTGCAGGAGATCTTAGATGGTTGTGCTGGCGTGGTTTTCCGTTAACTTATGCACCTGCAGAAATATTTCAGCAAGGAAATTTAGTTGCTATTGAATTAAAATATAGCAATCTCAAACAAATGTGGAAGAAGAGCCAGATGCTAGAGAATCTGAAAGTTCTTAATCTTAGTCATTCCAAGGATTTGACTAAAACCCCAGACTTTTCATACTTGCCTAATCTTGAAAAGCTAGTACTGAAAGATTGTCCAAGTTTGACTGTGGTCTCCCATACCATTGGATATCTCCATAAACTAGTTCTGATAAATCTGAAAGACTGCACAGGTCTTGGGAACCTTCCTAGAAGCATCTATAAATTGAAATCTCTAGAAACTCTGATTCTTTCAGGATGTTCAATGATTGACAAGTTGGAGGAGGATTTGGAACAGATGGAATGTTTGACAACCTTGATTGCAGATAACACTGCTATAACAAAAGTGCCCTTTTCAATAGTAAGATCAAAAAGCATTGGATATATTTCTTTATGTGGCTTTGAAGGATTTTCTCGTGATGCATTTCCTCATCTCATTTGGTCTTGGATGTCACCAACAAACAATCTCTCATCCCTAGATGTGGCCAATATTTCATCTCTTGTTACAACATTAGATGTCCCAAACACTAATTCCTATACTCTTTCATATACTTTCAAAGACCTTCTAAAGCTTCGAAGTCTTTGTGTGAGGTGTGGCTCAGAACTTCAACTAAGTCGAGATGTAGCTAGAATTTTGGATATCTTAAAAGCCACAAATTGGAATACTACTTCTCCCTCAATTGATTGCTGCAGTCAAGTTTACATTTCAGAGTCAAAGAATTCCTTCAATTCTCTTCTAATTCAAATGGGAACGAAATCCCATGCCCCCAATAATCTCAAAGCAGGGAGCATTGTACAGACTATCGATGGGCCAGGTGGAGATTATTTTTCAATCCCCGGTGACAAATATTCTGATTGGTTAACCTTCAATTGCAATGGTTCTTCCATAACATTTGATGTCCCACAAATGAATGGGCGTAACCTGAAGAGAATGATGTTGCGCATTGTCTTTCACTCCTCCTCAGATAATATAACATCACAAGGTTGTCAAAATGTGTTGATCATAAATTACACGAAGACAATCGTTCAAGTGTATAAAAGAGATACACTAACCTCTTTTGAGGATGAGGAGTGGCAGAGCATAACATCAAATCTAGAACCTGGTAACAGAGTGGAGGTTATTGTTGTTTGTGGGCAGGGATTCATTGTAGAGAAGACAGCAATATATCTCCTATATGATGAATCAATTAACGAAGAATTAATGGAGCACTGCCATACAACACATAAGGATGTTATTGTTTATGGTGATGATGATCATATGGCAGCAAATCGGAATGTTACTGTTTCTCGTAGAGATGAAAATAGATTTTGTAGACTCTTGACACTTCCTTCCCTTGTTCGCGCCGTTCTGATTTCGCGGCCTATCTGGTTCGGTCTGATTGGCATTCTGATATACACAAAGAGGGAAATGGCTAGTGGACTGCGTACAAAAATTTATTACTTACAAGAAGCCAATGAAGTCAACGGTACGGTGTAA 4224 0.3748 MIQEDSTKNENEDIKNIVEHVTLVLDKRDIFVADHPVGVESRVQDVVQLLNNQQSKYPLLLGIWGMAGIGKTTIAKAIYNQIGPHFEDKSFLLNIREVWKQNNGQVSLQERLLFDIYKTIKIKLDTTEAGKMILKERLHHKRILLILDNVNNLEQLNALCGSREWFGLGSKIIITTRDKHLLRMIGVDHVYKVVELEQSESVELFSWHAFKQGCAKEDFVELSQELVAYSGGLPFALEVLGSILFEKDNVIYTLNRSIQFAALQISFLEDKSLVTIDENNKLGMHVLLRDMAREIIMKESQIKPEPRIYDVFLSFRGEDTRASFTSHLYVALQNEGIYVFRDNDEIQRGEHISVSLLQAVRRSRICVIVLSRNYANSRWCMQELENIMESRRTTGLVVVPVFYGVDPSDVRHQTGKFGEAFEDLITSVSMDEYRVRNWRLVLLEVGGIAGFVFIDSRNESEDIKNIVERVTHLLDRTELFVAEHPVGIESRVQVVTKLLNMQQSKDVLLLGIWGMGGIGKTTIAKAIYNQIGSNFEGTSFLPNIREVWDQKDTNRVSLQQLVLYDIFKTTTLKIQNIESGKNILKKRLSQKKVLVVLDDVNELDQLNALCGSREWFGPGSRIIITTRDKRLIRLRRVDHVYRMQEMNESESLELFSWHAFKEAIPREDFATHSTNVVSYSGRLPLALEVLGSCLFDRGITEWESVLKKLKRIPNDQVQKKLKISYDGLSDDTQKEIFLDIACFFIGMDRNDVIHILNGCGLYPEIGISVLVERSLVTVDNKNKLGMHDLLRDMGREIVREKSPNEPEERSRLWLREDVLDVLSKYKGTKAVKGLSLRLTGKNTICLSTKAFEKLNRLRLLQLAGVRLNGDFKHLAGDLRWLCWRGFPLTYAPAEIFQQGNLVAIELKYSNLKQMWKKSQMLENLKVLNLSHSKDLTKTPDFSYLPNLEKLVLKDCPSLTVVSHTIGYLHKLVLINLKDCTGLGNLPRSIYKLKSLETLILSGCSMIDKLEEDLEQMECLTTLIADNTAITKVPFSIVRSKSIGYISLCGFEGFSRDAFPHLIWSWMSPTNNLSSLDVANISSLVTTLDVPNTNSYTLSYTFKDLLKLRSLCVRCGSELQLSRDVARILDILKATNWNTTSPSIDCCSQVYISESKNSFNSLLIQMGTKSHAPNNLKAGSIVQTIDGPGGDYFSIPGDKYSDWLTFNCNGSSITFDVPQMNGRNLKRMMLRIVFHSSSDNITSQGCQNVLIINYTKTIVQVYKRDTLTSFEDEEWQSITSNLEPGNRVEVIVVCGQGFIVEKTAIYLLYDESINEELMEHCHTTHKDVIVYGDDDHMAANRNVTVSRRDENRFCRLLTLPSLVRAVLISRPIWFGLIGILIYTKREMASGLRTKIYYLQEANEVNGTV. 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07875 1407 PRINTS Disease resistance protein signature 587 601 - -
Seca3g07875 1407 PRINTS Disease resistance protein signature 680 694 - -
Seca3g07875 1407 PRINTS Disease resistance protein signature 509 524 - -
Seca3g07875 1407 PRINTS Disease resistance protein signature 919 935 - -
Seca3g07875 1407 Pfam TIR domain 309 470 IPR000157 GO:0007165
Seca3g07875 1407 SUPERFAMILY L domain-like 786 1112 - -
Seca3g07875 1407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 249 IPR027417 -
Seca3g07875 1407 Gene3D - 481 638 IPR027417 -
Seca3g07875 1407 ProSiteProfiles TIR domain profile. 307 445 IPR000157 GO:0007165
Seca3g07875 1407 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 309 1103 IPR044974 GO:0006952
Seca3g07875 1407 SMART AAA_5 506 647 IPR003593 GO:0016887
Seca3g07875 1407 SMART AAA_5 57 200 IPR003593 GO:0016887
Seca3g07875 1407 Gene3D - 305 480 IPR035897 -
Seca3g07875 1407 Gene3D - 23 190 IPR027417 -
Seca3g07875 1407 Gene3D Ribonuclease Inhibitor 817 1144 IPR032675 -
Seca3g07875 1407 Pfam NB-ARC domain 492 725 IPR002182 GO:0043531
Seca3g07875 1407 Pfam NB-ARC domain 40 251 IPR002182 GO:0043531
Seca3g07875 1407 Gene3D - 195 267 IPR042197 -
Seca3g07875 1407 Gene3D - 645 729 IPR042197 -
Seca3g07875 1407 SMART till_3 308 448 IPR000157 GO:0007165
Seca3g07875 1407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 740 IPR027417 -
Seca3g07875 1407 SUPERFAMILY Toll/Interleukin receptor TIR domain 302 451 IPR035897 -
Seca3g07875 1407 FunFam Disease resistance protein (TIR-NBS-LRR class) 305 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07875 Seca-Chr3 197854402 197866224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07875 8 307 WRKY Transcription Factor Family AT4G12020 29.107 4.83e-27 118