Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07874 ATGGCTGCGGTTGCTGAGATTCCCGTTGATGCAGCAGCTGCTGCCATCAAATTGGACTCAAAACCAAAGCAAGAACCTGAATTCAATGTGCAGAACCTTGTTGACATTTTCACAAAGTTGAATCCTTTGGCCAAGGAGTTTTTCCCGTCATCTTATTCTCACCGTGATCAACTTCATCAGAGCTATAATCAGTTGTCACCCAACAAATTTCAGGTCAACAACAACCCATTAGCTAATGATCATCCCCCAAACAATCGAAGGAGAAGAAATAATTATAACCAAGGGGGAAGAAGATCTAATGGAAGAGTACTTAAGGGTCAGAGAGAAGATATCATTAGAAGAACAGTATATGTTTCTGATATTGATCAGCATGTAACTGAGGAGCGGCTTGCTGCCTTATTCAGCTCTTGTGGTCCAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCATTTGTGGAGTTCGCAGATGATTACAGTGCAAGGGCAGCTTTAAACCTTGGTGGTACTGTACTTGGATTCTATCCTGTCAGGGTCCTTCCTTCTAAAACTGCTATCCTTCCTGTGAATCCCACATTCCTTCCTAGGTCAGATGATGAGCGGGAGATGTGTTCCAGGACTGTCTACTGCACAAATATTGATAAAAAGATTTCTCAGGCTGAAGTCAAGAAATTTTTTGAAATATCTTGTGGTGAGGTTACTCGTTTAAGGCTTTTGGGAGATAATGTGCATTCAACTCGAATTGCCTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTATTGCGCTAAGTTGTAGTGGGATGCTCTTGGGAACCCAGCCTGTCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGGGTCCCTCGTGCAACAATAGCACATTAG 903 0.4297 MAAVAEIPVDAAAAAIKLDSKPKQEPEFNVQNLVDIFTKLNPLAKEFFPSSYSHRDQLHQSYNQLSPNKFQVNNNPLANDHPPNNRRRRNNYNQGGRRSNGRVLKGQREDIIRRTVYVSDIDQHVTEERLAALFSSCGPVIDCRICGDPHSVLRFAFVEFADDYSARAALNLGGTVLGFYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKISQAEVKKFFEISCGEVTRLRLLGDNVHSTRIAFVEFAMAESAIIALSCSGMLLGTQPVRVSPSKTPVRPRVPRATIAH. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07874 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 287 IPR000504 GO:0003723
Seca3g07874 300 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 37 292 - -
Seca3g07874 300 CDD RRM1_CID8_like 112 191 IPR034823 -
Seca3g07874 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Seca3g07874 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 278 IPR000504 GO:0003723
Seca3g07874 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 189 IPR000504 GO:0003723
Seca3g07874 300 SUPERFAMILY RNA-binding domain, RBD 201 292 IPR035979 GO:0003676
Seca3g07874 300 SUPERFAMILY RNA-binding domain, RBD 77 190 IPR035979 GO:0003676
Seca3g07874 300 SMART rrm1_1 115 185 IPR000504 GO:0003723
Seca3g07874 300 SMART rrm1_1 212 283 IPR000504 GO:0003723
Seca3g07874 300 FunFam Polyadenylate-binding protein-interacting protein 11 79 191 - -
Seca3g07874 300 FunFam Polyadenylate-binding protein-interacting protein 10 205 283 - -
Seca3g07874 300 CDD RRM2_CID8_like 207 288 IPR034825 -
Seca3g07874 300 MobiDBLite consensus disorder prediction 67 81 - -
Seca3g07874 300 Gene3D - 199 292 IPR012677 -
Seca3g07874 300 Gene3D - 60 190 IPR012677 -
Seca3g07874 300 Pfam Ataxin-2 C-terminal region 36 51 IPR009818 -
Seca3g07874 300 MobiDBLite consensus disorder prediction 67 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07874 Seca-Chr3 197839496 197850516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07874 113 268 Eukaryotic Initiation Factors Gene Family AT1G34140 27.673 1.19e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07874 - - lja:Lj3g3v0409470.1 471.085