Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07873 ATGCGGAACGGAAGAGCACCATGCTGCGACAAAAATCGAGTGAAGAAAGGCCTCTGGAGCCCTGCAGAAGACCAGAAGTTGATAGCTTTCATCCAAAAACATGGTCATGATAATTGGCGTGCTCTCCCCAAACAAGCAGTAGTTTATGATTTCATAATTTTGATATTAGGGCTTATGCGATGTGGAAAAAGTTGTCGTTTGAGATGGATAAATTACCTTAGGCCTGATTTGAAGAGAGGGAATTTTACAGAAGAGGAAGAGGAAACTATAATAAGGCTACATGCGGCCTGGGGAAACAAGTGGTCAAATATTGCTTCCAATTTGCCAGGTAGGACTGACAATGAGATCAAGAATGTATGGAACAGCCACTTAAAGAAAAGATTGGCTAACAACAGAAACTCAAGGTCTAGTGTAGACGAATCCAAGCTGAAATCATCTGTATCATCCTTCTCTTCATCTTCACTTGAATCAAATTTCTCAAATGAGACATCAAATTCAGTTATGACTATGATAGAGAAAGATGAGCAACAATCAATGAAACAAGTGTTAGATGACCTTATTGGGGTCCCTGAGAACCCAAATGAGTCAGTAAATTCAGTATCTTGGAGTGAGTCAAACACCTTCAATTCAAGCCAGATTCTTGCTTATGAACCAAAACAACAAATGAGTTCTCCATCCAGAAACGTAGGAGCTTATGATGTTAACAATGTGCTACAGGAGGTGGATGAACCCCAAATTCTTGAAATTCCATTGGAGCCAAATTATGATATTGAGAAAATGTTGGAGAACATAGGAACCAATCAGTCAGATGTGATCCAATTACACCAAGTTGATGGTAACCAAACCTCAAATTTTGGACAAGAGAGTGTTCAAGATATTGAAACTTGGAAGTGGTTACTTGACTCTGAGAATGATACTGGATTAGGTGCATCAAAGGAGACAAACAAGGATATGTTTCAACAAATGAATAATGCAATTGACTCAGGAATGGAGCTTTATTCATATGATTTTGATGCAATGCCAACAACTGAGTCTGATCTTGAACTAGGTTATGTTCAATGGGGATCTTCTTGGCCTCATAATCCAAGTATTTAA 1095 0.3872 MRNGRAPCCDKNRVKKGLWSPAEDQKLIAFIQKHGHDNWRALPKQAVVYDFIILILGLMRCGKSCRLRWINYLRPDLKRGNFTEEEEETIIRLHAAWGNKWSNIASNLPGRTDNEIKNVWNSHLKKRLANNRNSRSSVDESKLKSSVSSFSSSSLESNFSNETSNSVMTMIEKDEQQSMKQVLDDLIGVPENPNESVNSVSWSESNTFNSSQILAYEPKQQMSSPSRNVGAYDVNNVLQEVDEPQILEIPLEPNYDIEKMLENIGTNQSDVIQLHQVDGNQTSNFGQESVQDIETWKWLLDSENDTGLGASKETNKDMFQQMNNAIDSGMELYSYDFDAMPTTESDLELGYVQWGSSWPHNPSI. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07873 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 210 - -
Seca3g07873 364 CDD SANT 19 73 IPR001005 -
Seca3g07873 364 CDD SANT 92 124 IPR001005 -
Seca3g07873 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 73 IPR017930 -
Seca3g07873 364 SMART sant 15 75 IPR001005 -
Seca3g07873 364 SMART sant 78 126 IPR001005 -
Seca3g07873 364 SUPERFAMILY Homeodomain-like 13 120 IPR009057 -
Seca3g07873 364 ProSiteProfiles Myb-like domain profile. 11 73 IPR001005 -
Seca3g07873 364 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Seca3g07873 364 Gene3D - 80 149 - -
Seca3g07873 364 Gene3D - 8 78 - -
Seca3g07873 364 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
Seca3g07873 364 Pfam Myb-like DNA-binding domain 16 73 IPR001005 -
Seca3g07873 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Seca3g07873 364 FunFam Transcription factor RAX3 9 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07873 Seca-Chr3 197773913 197779575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07873 1 320 MYB Transcription Factor Family AT1G79180 40.870 6.45e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g07873 Myb_DNA-binding 1.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07873 K09422 - gmx:100805511 340.502