Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07872 ATGGCGAGGACGAGGCTCAGAATGGAATGGGCAGAATCCGATTCAAGCTCTGATTCTCTGATAATACGCATCTTAGAGTGCAGGTTCTTTCGTCGTGCTCGTAAGAAGGATGAAGTAACTTTTTCTTCAGGAAGTTTTACTTCTCGCAGAAACTTAAGAGGATTGGGCGAATTGGAGTTTCTTGAGGAGCTCGCCGAAGGCGGTTACGGCAGAGTTTTCCGCTGCCGTGATCTCAAAGAAGGCGGCATTGTCGCCGTTAAACAAATAGCAATTATCGGCATACACGAAGGAATTCCCGGTTTCATCCTCAGAGAAGTCTCGCTTCTCAAAGAGTTGAACCATCCCAACATTGTCAGGTTGTTGAGAGTAATTTCCATGAACGACAAATACGTGAATCTCGTTTTTGAGCAGCTTGATTGTGATCTTCATCAGTACATTTATAATCGTCGTTACCCTAAGGATTCGATGACTAGAAAGAGTTTGCTGCATCAAATACTCTCTGGCGTGGCATACTGTCATGCTCATAAGATTCTCCACAGAGATTTGAAACCAAGGAATTTGCTGGTTGATCTTTCTAAAATGACAGTCAAGCTGGCTGATTTCGGTTTGGCTAGAGAATTTGCAGATCCTGACACGTTATATACTGACAAAATAGCAACTCGCTGGTATAGGGCACCTGAAATCTTGTTTGACTCCCGTCGATATTCAACCCCAGTTGATTTGTGGTCAGTAGGCTGTATATTTGGTGAGATGGTACTGGGAAAGCCTGTATTTCAAGCTATTAGTTGCCCGGATGAATTAGAGTCGATTTTCAGAATGTTAGGTGCCCCGTCAGAGGACACGTGGCCAGGAGTCACTGAATTGTGTACTCACCTTCAAAGCTATGCCGAATTTAAACCAATGGACCTGTCAACAATTTTTGCCGATCTTGAACCAGCTGGCGTTAGTCTTCTATCGATGATGCTTTGCCTGGACCCAGTGAGAAGGATTTCTGCCGAAGCTGCTCTAAAGCATGCTTACTTTAACGATTTGGTATCTCTTCTGCTGCTCTCTTAA 1056 0.4413 MARTRLRMEWAESDSSSDSLIIRILECRFFRRARKKDEVTFSSGSFTSRRNLRGLGELEFLEELAEGGYGRVFRCRDLKEGGIVAVKQIAIIGIHEGIPGFILREVSLLKELNHPNIVRLLRVISMNDKYVNLVFEQLDCDLHQYIYNRRYPKDSMTRKSLLHQILSGVAYCHAHKILHRDLKPRNLLVDLSKMTVKLADFGLAREFADPDTLYTDKIATRWYRAPEILFDSRRYSTPVDLWSVGCIFGEMVLGKPVFQAISCPDELESIFRMLGAPSEDTWPGVTELCTHLQSYAEFKPMDLSTIFADLEPAGVSLLSMMLCLDPVRRISAEAALKHAYFNDLVSLLLLS. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07872 351 FunFam CMGC family protein kinase 140 346 - -
Seca3g07872 351 Gene3D Transferase(Phosphotransferase) domain 1 140 346 - -
Seca3g07872 351 SUPERFAMILY Protein kinase-like (PK-like) 57 344 IPR011009 -
Seca3g07872 351 PANTHER CELL DIVISION PROTEIN KINASE 59 341 - -
Seca3g07872 351 Gene3D Phosphorylase Kinase; domain 1 43 139 - -
Seca3g07872 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Seca3g07872 351 CDD STKc_CDK_like 69 341 - -
Seca3g07872 351 SMART serkin_6 58 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07872 351 ProSiteProfiles Protein kinase domain profile. 58 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07872 351 Pfam Protein kinase domain 60 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07872 Seca-Chr3 197709112 197712650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07872 55 344 Core Cell Cycle Gene Families AT3G48750 49.485 5.10e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca3g07872 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07872 K02206 - gmx:100799974 380.563