Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07869 ATGACTTGTTTCCATTTCTTGTGTAGTAAGAAACCAACTTCTTTACGAAGACGAAATATTGACATCGATGAAGAACTTTCAGGCATTCAAAATGTAAGAATCTATACCTACAAAGAACTAAAAGTTGCCACTGATGATTTCAGTCCGGCTAATAAAATCGGGGAAGGTGGTTTTGGTTCTGTCTATAAGGGATTGCTAAAAGATGGGAAAATAGCTGCTATGAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAAGGAATTCATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAACTATATGGTTGTTGCGTGGAAGGCGATCACCGAATATTAGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACCCTTCTAGGTGGAGGTCACAGCAATGTCTACTTTGATTGGCGAACACGATCTAGGATATGCATTGGGGTTGCACGTGGGCTTGCCTTTCTTCATGAAGAAGTACAGCCACATATTGTTCACAGGGATATAAAGGCAAGCAATATTCTCCTTGACAAGAACCTTAGGCCTATGATTGCAGATTTTGGTCTTGCAAAGCTTATTCCAACATACATGACTCATGTCAGCACACGTGTTGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGCTGACACGTAAAGCAGATATTTACAGTTTTGGCGTCCTCCTTGTGGAGATAGTCACTGGGAGATGTAACACAAATACACGATTACCTCTAGGAGAGCAATATATTCTAGAAAAGACATGGGAGCTTTATGAGCGAAAGGAATTGGTAGAGCTGGTAGACATATCACTAAATGGGGAATTCGATGCTGAGGAGGCTTGTAATATTCTGAAAATTGGACTTCTTTGCACTCAGGATAATCCTAAGCTCAGGCCAACCATGTCTTCTGTGGTCAAGATGCTCACTGGAGAAAAAGATGTTAATGAAAGTAAGATTACAAAACCAGGCTTGATTTCAGATGTTATGGACCTTAAAATCAGAGAGCCAAAAAATAATAATGATACGAAGACTTCATCTTCATACAATGCTTCTTCTGCCTCAGACAGTCAGGCTACTACCATGTCATTAGCTACTTCAAGTGCTGCAACTACAACCTTCAGTGTAAAATATGATCAAACCATGTAA 1176 0.398 MTCFHFLCSKKPTSLRRRNIDIDEELSGIQNVRIYTYKELKVATDDFSPANKIGEGGFGSVYKGLLKDGKIAAMKVLSAESRQGVKEFMTEINVISEIEHENLVKLYGCCVEGDHRILVYNYLENNSLAQTLLGGGHSNVYFDWRTRSRICIGVARGLAFLHEEVQPHIVHRDIKASNILLDKNLRPMIADFGLAKLIPTYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVTGRCNTNTRLPLGEQYILEKTWELYERKELVELVDISLNGEFDAEEACNILKIGLLCTQDNPKLRPTMSSVVKMLTGEKDVNESKITKPGLISDVMDLKIREPKNNNDTKTSSSYNASSASDSQATTMSLATSSAATTTFSVKYDQTM. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07869 391 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07869 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Seca3g07869 391 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Seca3g07869 391 Gene3D Phosphorylase Kinase; domain 1 11 122 - -
Seca3g07869 391 MobiDBLite consensus disorder prediction 350 367 - -
Seca3g07869 391 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07869 391 PIRSF TyrPK_CSF1-R 47 128 - -
Seca3g07869 391 PIRSF TyrPK_CSF1-R 282 389 - -
Seca3g07869 391 PIRSF TyrPK_CSF1-R 147 253 - -
Seca3g07869 391 SUPERFAMILY Protein kinase-like (PK-like) 24 318 IPR011009 -
Seca3g07869 391 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 359 - -
Seca3g07869 391 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07869 391 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Seca3g07869 391 FunFam cold-responsive protein kinase 1 123 334 - -
Seca3g07869 391 FunFam cold-responsive protein kinase 1 17 122 - -
Seca3g07869 391 CDD STKc_IRAK 53 320 - -
Seca3g07869 391 MobiDBLite consensus disorder prediction 343 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07869 Seca-Chr3 197607554 197612909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07869 16 374 Receptor kinase-like Gene Family AT1G56120 51.524 4.31e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07869 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07869 - - gmx:100800503 612.068