Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07852 ATGGACAATGAGACTCTTGGTCCTGCTACATACTTTGTAATTGATAGTGATACCAATAGATGGGCCGTTAGTAATGTTGGAGTATTTACTTACAACAACAATCCTCAATACAAAATTTTTTTACCTATGGACCAAAAGAAAGAAAGAAATATTGACACTATTCAGTTCACTCTTACTCTGGACCCAAAGCTCTTCCAAACAGCTCGGATCTCTGCATCATCGCTAAGATATTATGGCCTGGGACTGGAAAATGGTTTTTACAACGTCACCCTCCAATTTGCAGAAACAGCTATTCAGGATACTGCCACATGGAAAAGCCTTGGGAGACGGGTCTTTGATATTTATATCCAGGGTAATCTTCTTGTGAAGGATTTTGACATACAAAAGGAAGCTGGGGGCTTCTCTTACAGAGCTGTCCCAAAGCAATTTAGGATTGAGGTGAAAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGAGTTGCTGCATACCAGCTCAAGGTACTTATGGGCCTTTGATTCAAGCCATCAGTGTCACCCCAGATTCCATACCTACTCTCAGTAACAACGCCCCAAGCAGTGAAAATAATAGAACTGGTCTGATCATTGGAATTGTAGCTGGTGTTGGAGTTGTAAGCTTTCTATCACTTTTTGCCGTTTTCTATTTCGTTCAGAGAAGAAAACACAATGATGATGATGAAGAGCTTTTAGGTATTGATACAAAGCCATACACTTTCAGCTATTCTGAGTTAAGGAATGCTACAAATGACTTCAATCTTGACAATAAGCTTGGAGAGGGAGGTTTTGGACTTGTTTATAAGGGGACACTCAATGATGGAAGAGTTGTTGCTGTTAAACAACTCTCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAGCTGAGATTGCTACTATATCTGTAGTGCAACATCGTAATCTTGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATAAAGCATTATTTGAGTTAGTTAGTGGAAGGGCAAATTCTGGTTCAAGTTTGGAAGGAGAGAAGACATTTCTTCTAGAATGGGCTTGGCAACTTTATGAAAACAACTGCATAACTGATCTGATAGATCCTAGACTATCAGAATTCAACGAGGAAGAAGTAAAACGCATCGTGGGAATAGCGCTTTTGTGCACTCAAGCATCACCAACTTTACGACCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATTGTGAAATGAGTACTGTAACTTCGAGGCCTGGATACTTGACTGACTTTATTTTTTATGATCTGACCAGCATGATGTCTGACATTACAATTAGAGAATCGGATTCAAGTCATTACAACTCATCAGCAAGTACCAACATAGTTGGTGGTGCAGACCATTCACCAATAAGTCCTTCTAAACCCATCCTTCATTAG 1470 0.3973 MDNETLGPATYFVIDSDTNRWAVSNVGVFTYNNNPQYKIFLPMDQKKERNIDTIQFTLTLDPKLFQTARISASSLRYYGLGLENGFYNVTLQFAETAIQDTATWKSLGRRVFDIYIQGNLLVKDFDIQKEAGGFSYRAVPKQFRIEVKENYLEIHLFWAGKGSCCIPAQGTYGPLIQAISVTPDSIPTLSNNAPSSENNRTGLIIGIVAGVGVVSFLSLFAVFYFVQRRKHNDDDEELLGIDTKPYTFSYSELRNATNDFNLDNKLGEGGFGLVYKGTLNDGRVVAVKQLSVGSHQGKSQFIAEIATISVVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDKALFELVSGRANSGSSLEGEKTFLLEWAWQLYENNCITDLIDPRLSEFNEEEVKRIVGIALLCTQASPTLRPSMSRVVAMLSGDCEMSTVTSRPGYLTDFIFYDLTSMMSDITIRESDSSHYNSSASTNIVGGADHSPISPSKPILH. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07852 489 FunFam Leucine-rich repeat receptor-like protein kinase 229 335 - -
Seca3g07852 489 SUPERFAMILY Protein kinase-like (PK-like) 241 350 IPR011009 -
Seca3g07852 489 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 345 463 - -
Seca3g07852 489 MobiDBLite consensus disorder prediction 461 477 - -
Seca3g07852 489 ProSitePatterns Protein kinases ATP-binding region signature. 266 288 IPR017441 GO:0005524
Seca3g07852 489 ProSiteProfiles Protein kinase domain profile. 260 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07852 489 SUPERFAMILY Protein kinase-like (PK-like) 345 458 IPR011009 -
Seca3g07852 489 Gene3D Phosphorylase Kinase; domain 1 222 335 - -
Seca3g07852 489 Gene3D - 7 185 - -
Seca3g07852 489 Gene3D Transferase(Phosphotransferase) domain 1 340 438 - -
Seca3g07852 489 Pfam Malectin domain 48 179 IPR021720 -
Seca3g07852 489 Pfam Protein tyrosine and serine/threonine kinase 261 347 IPR001245 GO:0004672|GO:0006468
Seca3g07852 489 MobiDBLite consensus disorder prediction 461 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07852 Seca-Chr3 196494102 196516576 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07852 346 449 Receptor kinase-like Gene Family AT1G56120 65.385 5.05e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07852 Malectin 6.7e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07852 - - lja:Lj3g3v0397040.2 546.969