Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07850 ATGTCAATACCAAAATGGCACCATTTGCCACATTACTCAACTGAAGGTTTTTATAATGGATGTTGTTGGTCAGATCCCAGAAGAGCTTTGGACTCTGACTTACCTTTTCAATTTGAATTTGAACCAAAATTATTTGACAGGGGATTAGCTGCTAATTCTTTATCAGGAGAGCTTCCAAAGCAGTTAGGAAATCTTACTGATTTGAGATCACTGTCTTTAATGCAGAACAATTTCTCTGGATCTCTTCCCCATGAGCTAGGGAGTCTAGTGAAATTAGAAAATCTAAGATTTCAAGGAAACTCATTTGAAGGTCCAATACCATTATCATTGTCCAAATTGACTGATCTACAGGAATTGAAGATAAGTGAATTATCTCAGCAAAGCTCCTCACTGGATTTTATGCGAAATTTGAAGTCCTTAACGATCTTAGTATTGAGGAACAACAATATTTCTGGCACAATTCCAAGTAGTCTTGGTGAACTTCAGAGTTTGACACAATTGGATTTGAGCTTCAACAACCTAATTGGACAAATTCCAAACTCATTGTTCAATTTGAGTTCCCTTTCTTACTTGTTTTTGGGTAATAACAAGCTAAATGGTACAATTCCTCCGGAAAAAAGTGCATCTCTACATACTATAGACTTATCATATAACAACTTAAATGGGAGCTTTCCTTCTTGGATCACTGAACAAAATTTGCAACTCAATTTAGTTGGCAACAATATCAAAGTAGAAAATTCAGATACCAGTGGTATGCCTTCAGGACTAAAGTGTCTTCAGCGTGACTTTCCTTGCAATCGCGGCACTGGAATATATTATAACTTTTCAATCAATTGTGGTGGTCCTCAAACCAAATCTTCCAATGGAATTGTTTATGAAAAAGATAATGAGGCACTTGGTCCGGCTACATATTATGTGACAGACACGGAGAGGTGGGCAGTTAGTAATGTTGGGTACTTCAGTGGAAGCACCAATAGTCAGTATAGAAGTTCTGTGTTGAATGAATTCTTAGGTACTGTAGATTCAAACTTGTTTCAAACGGCCCGACTCTCTGCTTCATCATTGCGATATTATGGCTTGGGTCTAGAAAATGGTGATTATAATGTGACCCTCCAATTTGCCGAAAGTAAAATTTTGGATTCTACCACATGGAGAAGTTTTGGGAGGCGAGTCTTTGATATTTACATTCAGGGGAATCTTGTTTTAAAGGATTTTGATATACAAAAGGAAGCTGGTAAGGTGTCTTTCAAAGCTGTGCGAAAGGAATTTAGAACTCAAGTATTGGAAAACTACCTTGAGGTCCATCTTTTTTGGGCTGGAAAAGGGACTTGCTGCATACCTGATCAATTTACTTATGGACCCTTAATTTCAACTTTAAGTGCAATCCCGGATTTCATTCCCTCCGTTGGTAATAAGCCTCCAAGTCCTCCAACCAGTAAGAAGAAAAAGACCGATCTGACAGTGAAAATAGCTCTTGGAGTTGTACTTCCAATCATTGTTTCTGTTGTTGCGGTTTGTTTTATTATTCAAAGAAGACGGCATGTTAATGAAAATGAAGAGCTCTTGGGTATAGAAGGTAAATCAGACACATTCACTTATTCTGAATTGAAGAATGCCACAGATGACTTCGATTCTGCCAATAAGCTTGGAGAGGGTGGATTTGGCCCTGTTTACAAGGGGATACTGAATGATGGAAGGGTGATTGCTGTGAAGCAACTGTCTGCCCGATCTCGCCAAGGAAACTCAGAGTTCATGACTGAGATTGCTACTATATCAGCAGTTCAACATCGTAACCTCATTAAGTTACACGGATGCTGCGTTGAAAGGGATCAAAGGCTTCTTGTTTATGAGTATTTAGAAAATGGGAGCCTTAATCAAATACTATTTGGAAAAGATAGTTCAATCCTCAATTGGCCAATGCGATATCGTATCTGTATGGGCATTGCACGAGGCCTAGCCTATCTCCATGAAGAGTCACAGCCTCGCATAATTCACCGTGATGTGAAGGCTAGTAATATTCTACTTGACCATCAATTCATGCCTAAGATATCTGATTTTGGTTTGGCTAAGCTATTCGATGAAGAAAAAAGCCACTTAAGTACTCGTCTTGCTGGGACAATGGGATATTTGGCACCGGAGTATGCCTGGCGTGGCCACCTTACAGAGAAAGCAGATGTATTTTCCTTTGGCATTGTGGCTCTAGAGATTGTTAGTGGAAGGCCTAATTCTGATTCTAGCTTGGACAATGAAGGAAAAGTAATGGAACTTCTAGAATGGGCTTGGAACCTGTATGTAAACAACAATGAAATTGAGTTGGTGGATTCAAGACTGAAAGAGTTTGATGAGATAGAAGTGAAACGAGTTGTTGGCATTTCTCTATTGTGCACACAAGCTTCACCTATCTTACGGCCATCCATGTCCCGCGTAGTGGCAATGCTTTCTGGAGATGTTGAAGTGACCCGTGTAACTTCAATGCCTGTATACTTGGCTTATATGAGCTTTGATGATGTAACTGACTTGGTGAATACAGATAATGGAATAGATGAGAGTTATCGCAAATCAGCAAACACCAGCATCAGGGGTGATATGCTCGTGTGA 2598 0.3945 MSIPKWHHLPHYSTEGFYNGCCWSDPRRALDSDLPFQFEFEPKLFDRGLAANSLSGELPKQLGNLTDLRSLSLMQNNFSGSLPHELGSLVKLENLRFQGNSFEGPIPLSLSKLTDLQELKISELSQQSSSLDFMRNLKSLTILVLRNNNISGTIPSSLGELQSLTQLDLSFNNLIGQIPNSLFNLSSLSYLFLGNNKLNGTIPPEKSASLHTIDLSYNNLNGSFPSWITEQNLQLNLVGNNIKVENSDTSGMPSGLKCLQRDFPCNRGTGIYYNFSINCGGPQTKSSNGIVYEKDNEALGPATYYVTDTERWAVSNVGYFSGSTNSQYRSSVLNEFLGTVDSNLFQTARLSASSLRYYGLGLENGDYNVTLQFAESKILDSTTWRSFGRRVFDIYIQGNLVLKDFDIQKEAGKVSFKAVRKEFRTQVLENYLEVHLFWAGKGTCCIPDQFTYGPLISTLSAIPDFIPSVGNKPPSPPTSKKKKTDLTVKIALGVVLPIIVSVVAVCFIIQRRRHVNENEELLGIEGKSDTFTYSELKNATDDFDSANKLGEGGFGPVYKGILNDGRVIAVKQLSARSRQGNSEFMTEIATISAVQHRNLIKLHGCCVERDQRLLVYEYLENGSLNQILFGKDSSILNWPMRYRICMGIARGLAYLHEESQPRIIHRDVKASNILLDHQFMPKISDFGLAKLFDEEKSHLSTRLAGTMGYLAPEYAWRGHLTEKADVFSFGIVALEIVSGRPNSDSSLDNEGKVMELLEWAWNLYVNNNEIELVDSRLKEFDEIEVKRVVGISLLCTQASPILRPSMSRVVAMLSGDVEVTRVTSMPVYLAYMSFDDVTDLVNTDNGIDESYRKSANTSIRGDMLV. 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07850 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 663 675 IPR008271 GO:0004672|GO:0006468
Seca3g07850 865 FunFam Leucine-rich repeat receptor protein kinase EMS1 34 128 - -
Seca3g07850 865 FunFam Leucine-rich repeat receptor-like protein kinase 272 463 - -
Seca3g07850 865 SMART serkin_6 543 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07850 865 FunFam Putative LRR receptor-like serine/threonine-protein kinase 129 250 - -
Seca3g07850 865 Pfam Protein kinase domain 545 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07850 865 Gene3D - 273 460 - -
Seca3g07850 865 SUPERFAMILY L domain-like 49 243 - -
Seca3g07850 865 SUPERFAMILY Protein kinase-like (PK-like) 525 813 IPR011009 -
Seca3g07850 865 Pfam Malectin domain 274 458 IPR021720 -
Seca3g07850 865 Pfam Leucine rich repeat 139 198 IPR001611 GO:0005515
Seca3g07850 865 Gene3D Ribonuclease Inhibitor 30 266 IPR032675 -
Seca3g07850 865 ProSiteProfiles Leucine-rich repeat profile. 163 185 IPR001611 GO:0005515
Seca3g07850 865 Gene3D Phosphorylase Kinase; domain 1 503 618 - -
Seca3g07850 865 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 35 839 - -
Seca3g07850 865 FunFam Putative LRR receptor-like serine/threonine-protein kinase 619 825 - -
Seca3g07850 865 Gene3D Transferase(Phosphotransferase) domain 1 619 832 - -
Seca3g07850 865 FunFam Leucine-rich repeat receptor-like protein kinase 513 618 - -
Seca3g07850 865 CDD STKc_IRAK 549 813 - -
Seca3g07850 865 ProSiteProfiles Protein kinase domain profile. 543 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07850 Seca-Chr3 196409064 196437791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07850 52 838 Receptor kinase-like Gene Family AT1G56120 57.365 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07850 Pkinase 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07850 - - qsu:111995102 1051.58