Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07838 ATGGCCTTTACTCATCAACTTTGTTCAAACTACACATTTCCTATTGATCTCACAGCAGAGTTCCCCACTGCAGGGGTGGCTGCAGTAAGTGGCAATACCTCAGTTATGGACAATACAATGTGGGGTCATCAGGATCCTGTGCTTGATAATGGAGCACTTGATCATATTGTACAATTTCAGGATTGGGACACCACCATGTCTAACCAGCCTTGGATGTCAACTTCCTCACCAGAATGCAAAATGGGCTTCTATGATGACATTGCAGGGTCTCAGAATTTCAATGGTAGATACCAACCACAAATTGGTGAGTTTAAGGAGGATATTAAGCCACCTGCTTATCCTAATACTGCCACACAAAACTGGGGAATTCAAGATCAAATGCCATCTAGTGAAGAACCTAACATAAAAGCAGAAAGATACTCAGAAGAAGAAAGAAGGGAAAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGGAACTTCAACAAAACCATCAAGTATGCATGTCGGAAAACCTTAGCTGATCGGCGAGTCAGAGTTAGGGGAAGGTTTGCAAGAAACAATATTGACCTATCATCTGAGGAAGACATGGCAAGGAAATTAAACAATGTGAATAATAATCACAAAGAGGACTTTTATGCGGATGATTCAATCCAATTCCAGTTCCAGGTAATTTTCACTCTAAATAATGATGATGATGATTGGCTGCAAGAGGCGATGACAAGTTTGGTCTATCTATCTCATTCTTCCCCGGATGATGATATATAG 768 0.4023 MAFTHQLCSNYTFPIDLTAEFPTAGVAAVSGNTSVMDNTMWGHQDPVLDNGALDHIVQFQDWDTTMSNQPWMSTSSPECKMGFYDDIAGSQNFNGRYQPQIGEFKEDIKPPAYPNTATQNWGIQDQMPSSEEPNIKAERYSEEERRERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNIDLSSEEDMARKLNNVNNNHKEDFYADDSIQFQFQVIFTLNNDDDDWLQEAMTSLVYLSHSSPDDDI. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07838 255 ProSiteProfiles CCT domain profile. 145 187 IPR010402 GO:0005515
Seca3g07838 255 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 102 192 IPR045281 GO:0009909
Seca3g07838 255 Coils Coil 191 211 - -
Seca3g07838 255 MobiDBLite consensus disorder prediction 119 140 - -
Seca3g07838 255 Pfam CCT motif 145 187 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07838 Seca-Chr3 196094734 196096695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07838 128 198 Response Regulator Gene Family AT5G61380 40.000 1.48e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g07838 CCT 1.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07838 - - vra:106761508 253.447