Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07832 ATGGGTTTTGGTGATTTCACCAACAAGGATGATGAAGGTCCACTTCCAGGGTTCCGATTCCACCCCACAGATGAAGAACTTGTAGGTTTCTATCTTCGCCGAAAGCTTGACAAGAAACCCATTAGCCTCGAACTCATCAAACAGATCGATATATACAAATATGATCCATGGGATCTTCCAAAAAGCAGTACTAGTGGTGGGGAGAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGAAAGTACAGGAATAGCATAAGGCCCAATAGGGTGACTGGCTCTGGGTTCTGGAAAGCAACTGGGATAGACAAGCCCGTGTACTCACTCGGAGGACATGGCAATGATTGCATTGGTCTCAAGAAAACATTAGTCTACTACCGTGGTAGTGCGGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCCTCTAATAATGATACCAACACCAACAACAACAATATTGCAGACATTGCACAACAAGAAGCCGTAAGAAATGAAATTTGGACATTGTGTCGAATTTTCAAAAGGAATGTGTCACCAAGAAAGCAGTACAGTACACCCGATTTGAGACAATTTGGTACTAAGCGTCTCTGCACTGAGAAGATCACTAGAACGAGTAGCGTGGAGCATTGTAATGCTAATAGAAAAGCATATATAAATTTTGGCTCGGGCTTTGGTCATTATCACAATGATCATAAGCCTATGATTAACAACAACGCTAGTAGTGATCAAAGGCGTGAGTTTCTTGTGGATCAATTGTTGAGCTCTCCCGTGGCACAACAACCACCACCTAAAGTAGTAAATGCACCGTCTTCAAACTTTTGGATTAGCCCCGTAGATGATGACTTCTTCAAATTTGAGAACTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCAGTTGATACACCCATAATGTAA 927 0.4272 MGFGDFTNKDDEGPLPGFRFHPTDEELVGFYLRRKLDKKPISLELIKQIDIYKYDPWDLPKSSTSGGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSLGGHGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNNDTNTNNNNIADIAQQEAVRNEIWTLCRIFKRNVSPRKQYSTPDLRQFGTKRLCTEKITRTSSVEHCNANRKAYINFGSGFGHYHNDHKPMINNNASSDQRREFLVDQLLSSPVAQQPPPKVVNAPSSNFWISPVDDDFFKFENWDELGSVVKFAVDTPIM. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07832 308 Pfam No apical meristem (NAM) protein 16 144 IPR003441 GO:0003677|GO:0006355
Seca3g07832 308 Gene3D NAC domain 23 182 IPR036093 GO:0003677|GO:0006355
Seca3g07832 308 ProSiteProfiles NAC domain profile. 14 179 IPR003441 GO:0003677|GO:0006355
Seca3g07832 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 234 - -
Seca3g07832 308 FunFam NAC domain-containing protein 35 23 182 - -
Seca3g07832 308 SUPERFAMILY NAC domain 12 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07832 Seca-Chr3 195689066 195691131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07832 11 190 NAC Transcription Factor Family AT5G39820 58.247 1.07e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g07832 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07832 - - gmx:100790471 403.675