Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07807 ATGATTTGTTTGTTGCTTCAGGGAATTTTGCCAACTGGACAAGAAGTTGCTATCAAAAGACTTTCAAAATCTTCTGGACAAGGAATTGTGGAATTTAAAAATGAGCTTACACTCATATGTGAACTTCAGCACACGAATCTAGTACAACTACTTGGTTGCTGTGTACATGAAGAAGAAAGGATTCTAATCTATGAATATATGCCAAATAAAAGATTGGACTTCTATATATTCGAATGTACAAGAAGCAAGTTCCTAGACTGGAAGAAGCGTTTCAATATAATAGAAGGAATTTCTCAAGGATTACTCTATCTTCACAAGTACTCAAGACTCAAAATCATCCATAGAGACTTGAAGGCTAGCAACATACTTCTTGATGAGAATATGAACCCAAAAATTTCTGATTTTGGTATGGCAAGACTGTTTACACAACAGGAATCCACAATAAATACCAACAGGATTGTTGGGACATATGGTTATATGTCTCCAGAGTATGCCATGGCAGGAATTTGCTCTACAAAATCTGATGTTTATAGCTTTGGAGTATTGTTGCTCGAAATTGTTAGTGGAAGAAGAAACAATAGTTTCTATGATGCTGACCGCCCACTAAATTTAATAGGATATATATGTACAATTAGTTTCATTGAGCTCTTTTCTCAAGCATGGGAGCTATGGAATGATGGTGTGTGTCTCAAGTTGATGGATCCATCATTAAATGACATGATTATTCCTGATGAAGTGCAGAGATGCATTCATGTTGGTCTCTTGTGTGTAGAGCATTATGCAAATGATCGACCTACAATGTCGGAAGTTCTATCAATGTTAACGAATAAAAGTGCAGTTGTTACCTTACCAAAAAGACCAGCGTTCTATGTTGGAGGAGGGATCCTTGAGGAGACAACATCTTCAAGAGTGTCCACCATTGATTTTACGAAGGACATTTCTACCTCTTCTGAAGTATAA 960 0.3656 MICLLLQGILPTGQEVAIKRLSKSSGQGIVEFKNELTLICELQHTNLVQLLGCCVHEEERILIYEYMPNKRLDFYIFECTRSKFLDWKKRFNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARLFTQQESTINTNRIVGTYGYMSPEYAMAGICSTKSDVYSFGVLLLEIVSGRRNNSFYDADRPLNLIGYICTISFIELFSQAWELWNDGVCLKLMDPSLNDMIIPDEVQRCIHVGLLCVEHYANDRPTMSEVLSMLTNKSAVVTLPKRPAFYVGGGILEETTSSRVSTIDFTKDISTSSEV. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07807 319 Gene3D Phosphorylase Kinase; domain 1 3 66 - -
Seca3g07807 319 Pfam Protein tyrosine and serine/threonine kinase 13 272 IPR001245 GO:0004672|GO:0006468
Seca3g07807 319 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 67 282 - -
Seca3g07807 319 ProSiteProfiles Protein kinase domain profile. 1 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07807 319 SMART serkin_6 4 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07807 319 Gene3D Transferase(Phosphotransferase) domain 1 67 283 - -
Seca3g07807 319 SUPERFAMILY Protein kinase-like (PK-like) 10 290 IPR011009 -
Seca3g07807 319 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 301 - -
Seca3g07807 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 112 124 IPR008271 GO:0004672|GO:0006468
Seca3g07807 319 FunFam Uncharacterized protein 2 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07807 Seca-Chr3 194938538 194939920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07807 7 290 Receptor kinase-like Gene Family AT3G45860 54.895 1.81e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07807 PK_Tyr_Ser-Thr 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07807 - - mtr:11409308 489.189