Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07803 ATGGCAGAAACTGCAGTACTGTTTGCCCTGGGCCAAGTTTTCCAACTCCTAAAGGAAGAAACAAACCTGTTGAGAGGCGTCCATAAGGATTTTGCAGACATCAAAGATGAACTAGAGAGCATTCAAGCCATCCTCAAAGATGCTGATAGAAGGGCTGGTGATGAAGCAGACACTAATGATGGGATAAGAACATGGGTGAAGCAACTGAGAGAAGCATCCTTTCGCATAGAAGATGTCATTGATGAATACCTTTGGTTGATGCATGGGGTCAAACATCCTGCGGGATGTGGGGCTTTATTCTGCAAGATTGCAAGCCTAATAAGAACTTTGATTCCCCGTCATCAGATAGCATCTGAAATTCAGGACATTAAGTTGTCAATTCATGGAATCAAGGAAAGAAGTGAAAGGTATAAATTTCAAATTTCATACGAACAAGGATCGAGCAGCAGCACTGGAGGGACAGAAGATGGAAGATGGCGTGATCCTCGATTGGCTTCCCTTTTCATTGAAGAAACAGAGATCGTAGGATTTGAAGGCCCAAGAGAAGAATTGTTCGTAGGGATGGGAGGACTTGGAAAAACCACTCTTGCCAAGCATGTTTTTGACAGCCAAAAGATACGAACACACTTTGATTGTCGTGCTTGCATCACAGTCTCTCAATCATACACTGTGCCAGGGTTACTTATAAACATGATGGAGCAATTTTGTAAGGAGATGTTACACAAAATGGATGAGCAGTCACTAATTTCAGAAGTGAGGCAATACCTTCAGCATAAGAGGTATTTGATATTCTTTGATGATGTATGGAGAGAGGATTTTTCCGATCAAATTCAATTTGCCATGCCTAATAACAACAAAGGTAGTAGGGTCATAATCACAACTAGAATGATGCATGTTGCAGAATATTTCAAGAAATCATTTCTTGTTCACCTTCACAACCTGCAGCTTTTGCCTCATGACAAAGCATGGGAACTCTTCTGCAAGAAAGCATTTAGATTTGAGCTTGATGGGCATTGTCCACTGGAGCTTGAGGTTATGTCAAATGAAATTGTTAAAAAATGCAAGGGGCTACCTCTGGCAATTGTGGCCATTGGTGGTCTATTTTCAACAAAATCTAAAACCATGATTGAATTGCAAAAAGTGAGTCAAAATCTGAGTCTAGAGTTGGGGCGTAATCCCCATCTAACTAGTCTAACAAAGATTTTATCTCTTAGTTACGATGACCTGCCTTACTATTTGAAACCATGCATCTTGTATTTTGGTATGTATCCAGAGGACTACTCTATTAATCATAAGAGATTATGTCGACAATGGATAGCAGAAGGGTTTGTCAAATCTGATGACAGAAGAACTTTGGAGCAAGTTGCGGAGGAGTACTTGTCAGAGTTGATCCATAGAAGTCTGGTTCAGATCTCAAAAGTTGGTTTTGAAGGGAAGGTTAAAACTTGTCAAGTCCATGATTTATTACGGGAAGTGATCATTAGAAAAATGAAGGATTTGTGTTTTTGTCATTCTGTGCATGAAGATGATGAATTACTAGTAGCAGTTGGACTAACTAGACGCTTATCTGTAGCCACTAGCTCCAACAATGTGTTGAAGTACACTAGCAATTCACACATTCGTGCTATTCATGTTTTTGAAAAAGGTGGATTGCCTGAGGCTTTCATGGGTAAACTATCTTCAAAGTCGAGGACTTTGAAAGTACTTGACTTTAAAGGTACATCATTGGATAATCTTCCTAGTAATTTGGGGAATCTTTTTCACCTAAGGTACCTAAACCTAAGCAACACAAAAGTAAAGGCTCTCCCTCAATCTGTTGCTAAGCTACAGAACTTAGAGACCTTGGATTAA 1851 0.3982 MAETAVLFALGQVFQLLKEETNLLRGVHKDFADIKDELESIQAILKDADRRAGDEADTNDGIRTWVKQLREASFRIEDVIDEYLWLMHGVKHPAGCGALFCKIASLIRTLIPRHQIASEIQDIKLSIHGIKERSERYKFQISYEQGSSSSTGGTEDGRWRDPRLASLFIEETEIVGFEGPREELFVGMGGLGKTTLAKHVFDSQKIRTHFDCRACITVSQSYTVPGLLINMMEQFCKEMLHKMDEQSLISEVRQYLQHKRYLIFFDDVWREDFSDQIQFAMPNNNKGSRVIITTRMMHVAEYFKKSFLVHLHNLQLLPHDKAWELFCKKAFRFELDGHCPLELEVMSNEIVKKCKGLPLAIVAIGGLFSTKSKTMIELQKVSQNLSLELGRNPHLTSLTKILSLSYDDLPYYLKPCILYFGMYPEDYSINHKRLCRQWIAEGFVKSDDRRTLEQVAEEYLSELIHRSLVQISKVGFEGKVKTCQVHDLLREVIIRKMKDLCFCHSVHEDDELLVAVGLTRRLSVATSSNNVLKYTSNSHIRAIHVFEKGGLPEAFMGKLSSKSRTLKVLDFKGTSLDNLPSNLGNLFHLRYLNLSNTKVKALPQSVAKLQNLETLD. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07803 616 PANTHER DISEASE RESISTANCE PROTEIN RP 33 616 IPR044974 GO:0006952
Seca3g07803 616 Gene3D - 406 497 IPR036388 -
Seca3g07803 616 Gene3D - 4 117 - -
Seca3g07803 616 Gene3D - 317 405 IPR042197 -
Seca3g07803 616 FunFam Probable disease resistance protein At1g63360 406 495 - -
Seca3g07803 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 420 IPR027417 -
Seca3g07803 616 Gene3D Ribonuclease Inhibitor 549 616 IPR032675 -
Seca3g07803 616 CDD RX-CC_like 2 132 IPR038005 -
Seca3g07803 616 PRINTS Disease resistance protein signature 607 616 - -
Seca3g07803 616 PRINTS Disease resistance protein signature 182 197 - -
Seca3g07803 616 PRINTS Disease resistance protein signature 255 269 - -
Seca3g07803 616 PRINTS Disease resistance protein signature 354 368 - -
Seca3g07803 616 Coils Coil 31 51 - -
Seca3g07803 616 Gene3D - 184 309 IPR027417 -
Seca3g07803 616 FunFam Probable disease resistance protein At1g61300 164 306 - -
Seca3g07803 616 SUPERFAMILY L domain-like 485 616 - -
Seca3g07803 616 Pfam NB-ARC domain 185 408 IPR002182 GO:0043531
Seca3g07803 616 Pfam Rx N-terminal domain 5 85 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07803 Seca-Chr3 194896529 194898445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07803 187 365 WRKY Transcription Factor Family AT5G45050 29.891 4.84e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07803 K13457 - tpra:123915389 932.554