Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07798 ATGGCAGAAACTGCAGTATCGTTTGTCTTGCAGCAATTGTACCAACTTGCAATAGACGAAGGAGCTTTACTTAAAGGGGCCGAGAAAGATTTCAGAGACATCAAACACGAACTTGAGAACATTCAATCCTGCCTGAAGGATGCAGATAGAAGAGCTGCAGATGAAGGAAACACAAATGAAGGAATAAAAACATGGGTGAAGCAGCTGAGAGAAGCATCTTTTCACATAGAAGATGTCATTGATGAGTACATCATGTATGTGGCACAAAGGGTCAACCATCATCCAGGATGCACAGCCTCACTCCAAAAGATTGCTCACCTAATCAAATCCCTGAAGCAACGTCACCAGATTGCTTCTGAGATTCAAGACATTAAATTATCAGTTCGTGAAATCAAAGAAAGAAGTGAAAGGTATAAATTTGAGTCTTCTTCAGTTGAGAATGGATCAAGCTCAAGTAGCTCTAGAGGGAATAAAGATGTGAAATGGCATGACCCTCGAAGGGCTTCTTTTTTCATTGAAGAAACTGAAGTTGTTGGATTTGAGTCCCCAAGAGATGAATTGATTGATTGCTTAGTGGAGGGAACTACAGAGCGCAAGTTGGTTTCTGTGGTTGGAATGGGAGGACTTGGAAAAACCACTCTTGCCAAGCATGTTTTTGACAACCAGAAGGTAAAAAAGCACTTTGATTGTCGTTCTTTTATTACAGTTTCTCAACCATACACTGTGAGGGAGTTGTTGATAGAGATGATTCAGAAATTTTGTAAAGACAGTAATGAGACTCTTCCAAAGGGTCTGCATGAGATGGATGATAATACTTTGATTACTGAAGTGAGGCAATACCTTCAGTCAAAGAGGTATTTGGTACTGTTTGATGATGTTTGGAAAGAAGATTTTTCTGATGAGATTGAACATGCCATGCCTAATAATAACAGGGGAAGTAGAATAATAATCACCACTAGAATGATGCATGTTGCTGAGTTTTTTAAGAAATCTTTTCCTGTTCATGTTCACAAGCTGCAAAATTTGTCTCCAATCAAAGCATGGGAACTCTTTTGCAAGAAGGCATTTAGATCTGAGGATGGGAACTGTCTAGAAGAGCTTGGGGAGATGTCAATTGAAATTGTTCAAAAATGTGGAGGGCTACCTCTTGCAATTGTGGCAATTGGTGGTCTTTTGTCAACAAAAGCTAAAACCATGTTTGAATGGAGAAAGGTGAGTTAA 1221 0.3939 MAETAVSFVLQQLYQLAIDEGALLKGAEKDFRDIKHELENIQSCLKDADRRAADEGNTNEGIKTWVKQLREASFHIEDVIDEYIMYVAQRVNHHPGCTASLQKIAHLIKSLKQRHQIASEIQDIKLSVREIKERSERYKFESSSVENGSSSSSSRGNKDVKWHDPRRASFFIEETEVVGFESPRDELIDCLVEGTTERKLVSVVGMGGLGKTTLAKHVFDNQKVKKHFDCRSFITVSQPYTVRELLIEMIQKFCKDSNETLPKGLHEMDDNTLITEVRQYLQSKRYLVLFDDVWKEDFSDEIEHAMPNNNRGSRIIITTRMMHVAEFFKKSFPVHVHKLQNLSPIKAWELFCKKAFRSEDGNCLEELGEMSIEIVQKCGGLPLAIVAIGGLLSTKAKTMFEWRKVS. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07798 406 MobiDBLite consensus disorder prediction 139 161 - -
Seca3g07798 406 MobiDBLite consensus disorder prediction 142 156 - -
Seca3g07798 406 Pfam Rx N-terminal domain 5 91 IPR041118 -
Seca3g07798 406 CDD RX-CC_like 2 133 IPR038005 -
Seca3g07798 406 Gene3D - 161 333 IPR027417 -
Seca3g07798 406 Gene3D - 341 406 IPR042197 -
Seca3g07798 406 PANTHER TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG 6 279 - -
Seca3g07798 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 405 IPR027417 -
Seca3g07798 406 Gene3D - 4 118 - -
Seca3g07798 406 Pfam NB-ARC domain 183 405 IPR002182 GO:0043531
Seca3g07798 406 FunFam Probable disease resistance protein At1g61300 160 331 - -
Seca3g07798 406 PRINTS Disease resistance protein signature 200 215 - -
Seca3g07798 406 PRINTS Disease resistance protein signature 280 294 - -
Seca3g07798 406 PRINTS Disease resistance protein signature 378 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07798 Seca-Chr3 194795621 194796841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07798 199 397 WRKY Transcription Factor Family AT5G45050 29.612 1.05e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07798 K13457 - vun:114181831 588.956