Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07792 ATGGTTCTTGATTTTGTGAAATTCTCCACAGATGATTCTGTTCCTAGTGGGTCCAAGTTGCAGGAACTTGATTTTTTCAGTCCAGAGAATAAGGGATCATCATCTTGTTGGGCTAATAGCAGCAAGGAAAATGAAGGGAGAGATGAGAGAACAGAGGAAAAGTCAAACTCAGAGTCAAGGACTTTTTCTTGCTACTTTTGTGACAGAAAATTCTCTTCTTCACAAGCTTTGGGAGGGCATCAAAATGCACACAAACAACAGCGTGCACTAGCAAAGCGTCACAAAGAGATGCAAAACAATGCACCCTCATCATTTTTCTTATTACCCTTATCCTAG 336 0.4048 MVLDFVKFSTDDSVPSGSKLQELDFFSPENKGSSSCWANSSKENEGRDERTEEKSNSESRTFSCYFCDRKFSSSQALGGHQNAHKQQRALAKRHKEMQNNAPSSFFLLPLS. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07792 111 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Seca3g07792 111 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Seca3g07792 111 MobiDBLite consensus disorder prediction 27 41 - -
Seca3g07792 111 MobiDBLite consensus disorder prediction 42 57 - -
Seca3g07792 111 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 99 IPR044246 GO:0009788
Seca3g07792 111 MobiDBLite consensus disorder prediction 1 60 - -
Seca3g07792 111 Gene3D Classic Zinc Finger 38 105 - -
Seca3g07792 111 SUPERFAMILY beta-beta-alpha zinc fingers 56 99 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07792 Seca-Chr3 194674019 194674354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07792 28 102 C2H2 Transcription Factor Family AT5G01860 46.988 1.36e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g07792 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07792 - - gmx:102663393 112.079