Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07789 ATGTTTTCTCAAGATCAGATTGATAAGGGGGAGTCTGTGAATGCTGACCTACCTATGATGCCTCTGAGTACTATTCTAACAAGTACTGATAGTTTTTCTGATGAATATAAATTGGGTAAAGGTGGATTTGGCACTGTTTATAAGGGTGTTTTACCAGATGGAAGGCAAATAGCTGTTAAAAGGCTTTCAAAAACTTCTGTTCAAGGTGTGGATGAATTCAAGAATGAAGTAATATTGATTGCAAAATTGCAGCATCGAAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAAATGAAAAGCTGCTTGTCTATGAATACATGCCTAATTCAAGCCTTGATTTCCATCTATTTGATAAGGTGAAAGGTGCACAACTTAATTGGAAACAGAGATCAAACATTATTAATGGGATTGCTAAAGGGCTCCTATATCTTCATGAGGACTCTAGACTCAGGGTTATTCACAGAGACCTGAAAGCTAGCAACATCCTATTAGATCATCAAATGAATCCAAAAATCTCAGACTTTGGACTGGCAAGGACATTTGGTGGAGACCAGTGGCAGGCAAATACAATTAAAGTTGTGGGGACTTATGGATACATGGCTCCAGAATATGCAATGGAAGGCTTGTTTTCAGTTAAGTCAGATGTTTTCAGCTTTGGTGTTATTTTGCTAGAGATCATCAGTGGAAAAAAGAATGCTAGATTCTATCTTTCAGAGCATGGCCAAAGCCTTCCCGTATATGCATGGAACCTCTGGTGTGAAAGCAAAGGTTTGGAATTGATGGATCCATTGATAGAAAAGTCATGTGTACTTAGTGAAGTTCTGAAGTGTATACACATTGGTCTGTTGTGTGTACAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACATAGTGACTCTGCCCAGGCCAACACGCCCTGCATTTTCTGTTGGAAGGGCTGTCATTGAACAAGGGTCTTCATCAAACACTTCTATCTCTGTCAATGAAGTAACTGTGTCTGAAGTGAGGCCTAGGTGA 1047 0.3983 MFSQDQIDKGESVNADLPMMPLSTILTSTDSFSDEYKLGKGGFGTVYKGVLPDGRQIAVKRLSKTSVQGVDEFKNEVILIAKLQHRNLVRLLACCIEQNEKLLVYEYMPNSSLDFHLFDKVKGAQLNWKQRSNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHQMNPKISDFGLARTFGGDQWQANTIKVVGTYGYMAPEYAMEGLFSVKSDVFSFGVILLEIISGKKNARFYLSEHGQSLPVYAWNLWCESKGLELMDPLIEKSCVLSEVLKCIHIGLLCVQEDAADRPTMSSVVHMLASDIVTLPRPTRPAFSVGRAVIEQGSSSNTSISVNEVTVSEVRPR. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07789 348 ProSiteProfiles Protein kinase domain profile. 32 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07789 348 Pfam Protein tyrosine and serine/threonine kinase 36 303 IPR001245 GO:0004672|GO:0006468
Seca3g07789 348 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 108 311 - -
Seca3g07789 348 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 14 344 - -
Seca3g07789 348 SMART serkin_6 32 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07789 348 SUPERFAMILY Protein kinase-like (PK-like) 17 303 IPR011009 -
Seca3g07789 348 Gene3D Transferase(Phosphotransferase) domain 1 108 309 - -
Seca3g07789 348 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 107 - -
Seca3g07789 348 CDD STKc_IRAK 38 303 - -
Seca3g07789 348 Gene3D Phosphorylase Kinase; domain 1 2 107 - -
Seca3g07789 348 ProSitePatterns Protein kinases ATP-binding region signature. 38 60 IPR017441 GO:0005524
Seca3g07789 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Seca3g07789 348 Pfam Domain of unknown function (DUF3403) 305 348 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07789 Seca-Chr3 194564947 194569871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07789 15 348 Receptor kinase-like Gene Family AT4G23140 56.484 1.62e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07789 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07789 - - gmx:100798691 599.742