Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07784 ATGCTTCCAAATTTATTAAGTCAGGTAGCAAATGCAAATGTCTCATTGCAACGTTTAGAGGAACTGTTCTTGGCTGAGGAGAGAAACTTAAAACAAAATCCACCTATTGTACCAGGACTTCCAGCCATCTCAATTAAGAATGGATACTTTTCATGGGATCCTAAGGCAGAGAAGCCCACATTATCAAATATCAATGTGGAAATACCAATTGGAAGCTTAGTTGCAATCATTGGTGGTACTGGAGAAGGGAAAACATCACTTATTTCAGCAATGATTGGAGAGCTACCTCCTGTAGCCAATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTTCAATGCTACAGTTCGTGAAAATATATTATTTGGATCGAAATTCGAATATGAACGATATTGGAAGGCCATTGATGTTGCTGCTTTACAGCATGATCTTAGCTTACTACCTGGACATGATTTTACAGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAGAGAGTTTCCTTAGCTCGGGCTGTATACTCAAATTCAGATGTATATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCATGTTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTTCAAGGGAAAACCAGGGTTCTTGTCACCAACCAGCTTCATTTTCTCCCGCAGGTGGATAAAATTATTCTGGTTAGTGAAGGCATGATCATGGAGCAGGGAACCTTCGAGGAGTTGTCAAAATGTGGCTGTCTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAAGAAGCAGATAGTAATGAAGATAGAGATAGTCATGACAAGGATAGCATTCTGTCCTTGAATAATGAGGCAATTGTAGAGTTACCAAATGATGCAAGCTATGAGAAGAAGGGAAAATTACGAAAATCAGTACTGGTTAAGAAAGAAGAGCGGGAGACAGGTGTGGTTAGCTGGAAAGTTATAATGAGGTACCAATCTGCTCTGGGTGGACTGTGGGTGGTTTCCATTCTCTTCACATGCTATACATTAACAGAAGTTCTTCGAATTTCCAGTAGCACATGGTTAAGTGTGTGGACAGCTCAAGATTCCACTGCAACTTATGAAACAGGATATTTTCTTTTCATCTATGCACTTTTCTCATTTGGACAGGTATCTGTGGCCCTTGCAAACTCTTATTGGTTGATCATTTCAAGTCTTCGTGCTGCTAAAAGATTGCACAATGCAATGCTAGATAAAATCCTGCGGGCTCCAATGATATTCTTCCAAACTAATCCTGTTGGCCGCATAATTAATAGGTTTGCAAAAGACACAGGAGAGATAGATACCTATGTTTTTGCCTTGGTGAATAACTTTCTGGGGCAAGTCTGGCAACTGCTTTCAACATTTATTCTTATAGGCACCGTGAGCACAATATCCCTGTGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTACCAGAGCACAGCTCGAGAGGTGAAGCGCCTGGATTCCATTACAAGATCTCCTATTTATGCACATTTTGGAGAAGCATTGAATGGTTTATCAAGCATTCGTGCTTACAAAGCATATGACAGGATGGCACACATCAATGGAAAATTCATGGATAACAACATTAGATTTACTCTTGTGAATATCAGTTCAAACCGTTGGCTGACCATAAGGTTAGAAACATTGGGAGGCCTCATGATTTGGTTGATAGCAACATTTGCTGTCTTGCAGATTGGAAGAGCTGAAAATCAGGCAATGATTGCATCTACAATGGGTCTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTCCTCAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATTCTGTTGAGCGTGTTGACACATACATAAATCTAGAAACTGAGGCCCCAGGTATAATTGAGATTAATCGTCCTCCACCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGAATGTTGTTCTGAGTTACAGGCCTGAACTTCCCCCAGTTCTTCATGGATTGTCCTTTAAAGTACCTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCGGGAAAGTCTAGCATGCTTAATGCATTATTCCGGATTGTGGAACTACAAAGAGGAAGAATCATTATTGATGGCTGTGATATCTCCACATTCGGACTAGCAGATTTGCGAAAAGTTCTTACTATCATACCACAATCACCAGTTCTTTTCTCCGGAACTGTCCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGGAATCTTTGGAAAGGGCGCATTTGAAGGATGTAATAAGAAGAAATCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGAAAATTTCAGTGTTGGACAGAGGCAACTATTAAGTCTAGCTAGAGCATTGCTACGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCAGCTGTAGATGTTAGAACAGATGCCCTTATACAGAAAACTATCCGACAAGAATTTCAGTCCTGCACAATGCTCATCATTGCACACAGATTAAATACAATTATTGACTGCAATCGGATTCTGTTGCTTGATGCTGGCCGGGTTCTTGAATACAATTCACCAGGGGAACTCTTACAAAATGAAGAAACTGCATTCTACAAGATGGTTCAAAGTACTGGACCTGCAAATGCTCAGTATTTATGTAGCCTAGTATTTGGAAAGACAGTGAACAATTCTAATGAATATAACAATGGGCTGGAAAGCCAAATGAGACAATTAGCTTCTACTAACTGGGCTGCTGCTACTCAGTTTGCCATAGCTACTACCCTTTCTTCTTTACACCATCAACTTCAAAGGCCAAGTACTAAACAGAATAAAGATTTCCTTGATAGAACAAAGGATGCAGTGACAACACTTCAAGAAGTTCTAGAGGGGAAACGTGATGAAGATATAGAAGAGGAACTGACTAAATACCAGGTTCCTACAGATAGATGGTGGTCTACTCTCTATAAAGTTGTTGAAGGTCTTGCTGTCTTGATCAGATTGCCTCCGGACAACACTCAAATATTAGAACCTGATTTTGAAGGGAGATCCTTCGACTAA 3135 0.4016 MLPNLLSQVANANVSLQRLEELFLAEERNLKQNPPIVPGLPAISIKNGYFSWDPKAEKPTLSNINVEIPIGSLVAIIGGTGEGKTSLISAMIGELPPVANGNATIRGTVAYVPQISWIFNATVRENILFGSKFEYERYWKAIDVAALQHDLSLLPGHDFTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHVAQEVFRNCIKEGLQGKTRVLVTNQLHFLPQVDKIILVSEGMIMEQGTFEELSKCGCLFQKLMENAGKMEQEADSNEDRDSHDKDSILSLNNEAIVELPNDASYEKKGKLRKSVLVKKEERETGVVSWKVIMRYQSALGGLWVVSILFTCYTLTEVLRISSSTWLSVWTAQDSTATYETGYFLFIYALFSFGQVSVALANSYWLIISSLRAAKRLHNAMLDKILRAPMIFFQTNPVGRIINRFAKDTGEIDTYVFALVNNFLGQVWQLLSTFILIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRLDSITRSPIYAHFGEALNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLETLGGLMIWLIATFAVLQIGRAENQAMIASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEAPGIIEINRPPPGWPTSGSIEFENVVLSYRPELPPVLHGLSFKVPPTEKIGVVGRTGAGKSSMLNALFRIVELQRGRIIIDGCDISTFGLADLRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNPFGLDAQVSEGGENFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDAGRVLEYNSPGELLQNEETAFYKMVQSTGPANAQYLCSLVFGKTVNNSNEYNNGLESQMRQLASTNWAAATQFAIATTLSSLHHQLQRPSTKQNKDFLDRTKDAVTTLQEVLEGKRDEDIEEELTKYQVPTDRWWSTLYKVVEGLAVLIRLPPDNTQILEPDFEGRSFD. 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07784 1044 Pfam ABC transporter 684 832 IPR003439 GO:0005524
Seca3g07784 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 266 IPR027417 -
Seca3g07784 1044 CDD ABCC_MRP_domain1 43 243 - -
Seca3g07784 1044 FunFam Multidrug resistance-associated protein member 4 651 903 - -
Seca3g07784 1044 SUPERFAMILY ABC transporter transmembrane region 348 647 IPR036640 GO:0005524|GO:0016020
Seca3g07784 1044 Gene3D ABC transporter type 1, transmembrane domain 308 648 IPR036640 GO:0005524|GO:0016020
Seca3g07784 1044 Coils Coil 261 281 - -
Seca3g07784 1044 FunFam ABC transporter C family member 2 37 283 - -
Seca3g07784 1044 Gene3D - 25 294 IPR027417 -
Seca3g07784 1044 Coils Coil 2 22 - -
Seca3g07784 1044 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 348 630 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07784 1044 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 667 901 IPR003439 GO:0005524
Seca3g07784 1044 Pfam ABC transporter transmembrane region 348 609 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07784 1044 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 907 - -
Seca3g07784 1044 CDD ABCC_MRP_domain2 665 885 - -
Seca3g07784 1044 ProSitePatterns ABC transporters family signature. 169 183 IPR017871 GO:0005524|GO:0016887
Seca3g07784 1044 ProSitePatterns ABC transporters family signature. 804 818 IPR017871 GO:0005524|GO:0016887
Seca3g07784 1044 Gene3D - 651 903 IPR027417 -
Seca3g07784 1044 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 267 IPR003439 GO:0005524
Seca3g07784 1044 SMART AAA_5 70 250 IPR003593 GO:0016887
Seca3g07784 1044 SMART AAA_5 693 886 IPR003593 GO:0016887
Seca3g07784 1044 FunFam ABC transporter C family member 2 310 648 - -
Seca3g07784 1044 Pfam ABC transporter 61 196 IPR003439 GO:0005524
Seca3g07784 1044 CDD ABC_6TM_ABCC_D2 346 642 IPR044726 GO:0140359
Seca3g07784 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 900 IPR027417 -
Seca3g07784 1044 Coils Coil 973 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07784 Seca-Chr3 194131961 194140970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07784 665 901 Calmodulin-binding Proteins AT2G36910 33.610 6.52e-36 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07784 - K05665 gmx:100811691 1818.9