Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07772 ATGAAAATTGCTGTTGGAGCTGCAAAGGGTCTAGCTTTTCTTCATGAAGCAGAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTCTTAGACTCAGATTACAATGCAAAACTTTCTGATTTTGGGTTGGCAAAAGATGGACCTGAAGGTGATGACACCCAAATTTCAACCAGAGTTATGGGCACACAAGGCTATGCAGCCCCAGAATATGTCATGACAGGTCACTTGACAGCAATGAGTGACGTGTATAGCTTTGGAGTTGTGCTATTGGAGTTGCTAACTGGGAGAAGATCAGTGGACAAGAATAGACCTCCAAGGGAACAGAACCTAGTGGAATGGGCAAGGCCAATGTTACATGATTCAAGGAAACTTAGTAGGATAATGGATCCTAGACTTGAAGGTGCAGTTTTCTGA 423 0.4255 MKIAVGAAKGLAFLHEAEKPVIYRDFKASNIFLDSDYNAKLSDFGLAKDGPEGDDTQISTRVMGTQGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLHDSRKLSRIMDPRLEGAVF. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07772 140 Pfam Protein kinase domain 3 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07772 140 SUPERFAMILY Protein kinase-like (PK-like) 2 121 IPR011009 -
Seca3g07772 140 Gene3D Transferase(Phosphotransferase) domain 1 1 139 - -
Seca3g07772 140 ProSiteProfiles Protein kinase domain profile. 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07772 140 PANTHER OS01G0588500 PROTEIN-RELATED 1 137 - -
Seca3g07772 140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 21 33 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07772 Seca-Chr3 193767532 193768210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07772 1 137 Glycoside Hydrolase AT3G07070 62.319 1.96e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca3g07772 Pkinase 5.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07772 - - gmx:100797003 267.314