Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07760 ATGCAACGTTTATTTGAAAGATTAGAACACTTTGCACAAAAAGCACACCTTCTTGGATTGAAAGAAGGTGTTTCCAGTAGTGTTTGGCATGGAACTCCTACAAGTTCTGTGGTAGATGAATCTGTTATTTATGGCAGAGATAGTGACAGAAAGAAACTTAAAGATTATTTGCTATCAAAAGATAGAGACTCCAAAATAGGAGTGCTTTCCATTGTGGGCATGGGAGGGCTTGGTAAAACAACCCTTGCTAAACTCCTTTACAATGATCCTAATCCAAAGGAGAACTTTAATTTGAAAGCTTGGGCATATATCTCCAAGGATTTTGATGTTTTCAGGGTCACTAAAACCATTCTTCAATCCCTCACTTCAAAAACAACTGATGATAATAACCTGACTTCTCTACATGTTGAGTCCCTTGCTTCAAAAAATCATGATTCTGATAACTTGAATATTCTACAAGTGCAATTGCAACAAAGTTTAAGCCAAAAGAAATTTTTGCTTGTATTAGATGACATATGGGATGGAAACTATATTGATTGGAATAATCTAATGAGCATCTTTAATGCTGGGGAAATGGGAAGTAAGATCATCATCACAACACGAGATCAAAGTGTTGCACTAGCCATGCAAACCTTTCTTCCTAACCATCATTTGGAACCTCTGGAAAATGAAGATTGTTGGTCTTTACTTGCCAAACATGCATTTGGAGCAAGCAACTACCAACAACGGTCCGACTTAGAAGTGATTGGCAAAGAAATTTCCAACAAATGTGATGGCTTACCATTAGCCGCAGTAGCACTTGGGGGTCTTCTGCGCACCAAATTGTCACAAGATGATTGGAATAAGGTATTGAAAAGTAACATTTGGGATTTGCCAAATGTTGGGGTGCAACCACCTCTGCTATTGAGCTATCATTATCTTCCGGCCCCTTTAAAACAATGCTTTTCCTATTGTTCAATTTATCCAAAGAACTCCATTTTAGTGAAAAAGATGGTAGTTCAACTATGGATTGCAGAAGGCATAGTACATGATTCCAAAAGTCAAAAAAGTTTGGAAAAAGTAGGAGAAGAATACTTTGATGAACTAGTGTCAAGGTCGCTCATACTTCGACGGACTATTGATGGGGAAGAAAGCTTTGTAATGCATAACCTAATCAATGATTTAGCTACAATGGTTTCATCTGCATATTGTATCAGGTTGGATGAACAAAAGTCGCATGAAGGTCTTGAAAGAGTACGTCATTTGTCACATAATAGAGGGGAGTATGACTCACACAATACATTTGATAAATTGTATGGATTAAAAGGTCTACGTACCTTCCTACCCTTACCATTATTAGAAAGAGATCGATGGTGTTTTCATTACCTATCAAACAAGGTAGTAAATGAGTTGTTGCCAACAATGAAACAATTGCGGGTGTTGTCTTTGTCAGCTTATAGAATCCCTGAGTTACCCAACTCTATTGGAAATTTGAAATACCTGCGATACTTAAATCTATCTTTCACCGAGATTAAAAAGTTTCCTTATGTAACATGCAAGCTTTACAATCTGCAGACCTTGTTGTTATCCGGTTGTTGGAATCTCAGTGAATTGCCTGAGGACATGGGAAAATTGGTGAATCTACGCCACCTTGACATTAGGGGCACTGGATTAAAGGAGTTTCCGGTACAAATAACAAGATTACAAAATCTGCAAAGCTTATCTGATTTTATTGTCAGTGAACAACATGATGGAGTGAAGGTTGCAAAGCTGGGAAGATTTCCTCATCTACAGGGGAAGCTTTCCATCTCACAGCTACAAAATGTTGCCAACACCTCTGATGCTTTTCAAGCAAATTTGAAGATGAAAGAACAAATTGATGAGTTGGAACTAACGTGGCATGGGAATGGCTCTGGTTTGCAAATTCAAAGTGTTGTACTTGAACAGTTGCAGCCCTCAACAAATTTGAAGAGTCTCACCATCAGTGGCTGCGGTGGAACCAACTTTCCAAATTGGTTGGGTGATACTTTGTTTGGCAACATGGTGTCTTTGAGCATAATTAATTGTTATCATTTTTCATGGCTGCCACCCCTTGGACAATTACATAGCCTGAAAGAACTCTTTATTTCTGGGATGAGATCAGTGAAGACTGTCGGTGCTGAATTCTATAGAAGTAGTATGCATTCATGTCAACCATTTCCTTCCTTGGAGATTTTGAAATTTGAGAAAATGTTTGAGTGGGAAGAATGGAAATTGATTGGAGGTAGGGGTGGAAACAGGCCAGGCCAGGCTTTGGCAGGCCTGAGTCTGGCCTGA 2295 0.3878 MQRLFERLEHFAQKAHLLGLKEGVSSSVWHGTPTSSVVDESVIYGRDSDRKKLKDYLLSKDRDSKIGVLSIVGMGGLGKTTLAKLLYNDPNPKENFNLKAWAYISKDFDVFRVTKTILQSLTSKTTDDNNLTSLHVESLASKNHDSDNLNILQVQLQQSLSQKKFLLVLDDIWDGNYIDWNNLMSIFNAGEMGSKIIITTRDQSVALAMQTFLPNHHLEPLENEDCWSLLAKHAFGASNYQQRSDLEVIGKEISNKCDGLPLAAVALGGLLRTKLSQDDWNKVLKSNIWDLPNVGVQPPLLLSYHYLPAPLKQCFSYCSIYPKNSILVKKMVVQLWIAEGIVHDSKSQKSLEKVGEEYFDELVSRSLILRRTIDGEESFVMHNLINDLATMVSSAYCIRLDEQKSHEGLERVRHLSHNRGEYDSHNTFDKLYGLKGLRTFLPLPLLERDRWCFHYLSNKVVNELLPTMKQLRVLSLSAYRIPELPNSIGNLKYLRYLNLSFTEIKKFPYVTCKLYNLQTLLLSGCWNLSELPEDMGKLVNLRHLDIRGTGLKEFPVQITRLQNLQSLSDFIVSEQHDGVKVAKLGRFPHLQGKLSISQLQNVANTSDAFQANLKMKEQIDELELTWHGNGSGLQIQSVVLEQLQPSTNLKSLTISGCGGTNFPNWLGDTLFGNMVSLSIINCYHFSWLPPLGQLHSLKELFISGMRSVKTVGAEFYRSSMHSCQPFPSLEILKFEKMFEWEEWKLIGGRGGNRPGQALAGLSLA. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07760 764 PANTHER DISEASE RESISTANCE PROTEIN RP 39 734 IPR044974 GO:0006952
Seca3g07760 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 318 IPR027417 -
Seca3g07760 764 Gene3D Ribonuclease Inhibitor 451 741 IPR032675 -
Seca3g07760 764 Gene3D - 220 303 IPR042197 -
Seca3g07760 764 Gene3D - 304 391 IPR036388 -
Seca3g07760 764 Gene3D - 29 212 IPR027417 -
Seca3g07760 764 PRINTS Disease resistance protein signature 257 271 - -
Seca3g07760 764 PRINTS Disease resistance protein signature 68 83 - -
Seca3g07760 764 PRINTS Disease resistance protein signature 159 173 - -
Seca3g07760 764 PRINTS Disease resistance protein signature 512 528 - -
Seca3g07760 764 FunFam Probable disease resistance protein At1g61300 30 212 - -
Seca3g07760 764 FunFam Probable disease resistance protein At1g63360 304 391 - -
Seca3g07760 764 Pfam NB-ARC domain 51 285 IPR002182 GO:0043531
Seca3g07760 764 SUPERFAMILY L domain-like 380 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07760 Seca-Chr3 193178176 193180470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07760 463 567 WRKY Transcription Factor Family AT4G12020 36.792 4.14e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07760 - - tpra:123916222 978.393