Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07758 ATGTCTCATCCATTCACACCAGTTAAACAAGAAAATCAGCAGGCCAACAAACATGAAGCACCCCAAATGGTTGAACAACTAGGGAGTTTTGTTTGCTCTGTGTGCAATAACATGAGACCAAAATTTGAGTGGAAGAGAGACTTCACATATGCAGAGTTGCATGTGGCCACACAAGGTTTCTCCCCAAAGAACTTTCTGTCAGAAGGTGGGTTTGGTTCTGTCTACAGAGGAGAGCTGCAAGGACAGAAAATTGCTGTTAAGCAGCATATGCATGAAAGCTACAAAGGAGAGAAGGAATTCAAGTCTGAAGTTGATGCACTCAGCAATGCAAGACATGAAAATGTGGTAATGCTGCTGGGATCATGTTCAGAAGGAAACCACAGACTTCTTGTTTATGAATATGTCTGCAATGGTTCATTGGACCAACATTTATCACCAGAACATTCTCGTAAACCACTTTGCTGGCAAGACAGGATGAAGATAGCTAATGGAGCTGCCAAAGGATTGCTATACCTGCACGAGAACAGCATCATACACAGGGATATAACACCAAACAACATTCTTCTTACACATGATTATGAAGTATTGCTGGGTGGTTTTGGTTTGGCTAGAATTGTAACTGAAGAATCCTCATGCTCGATAGACTGTGATGGAAATCTGGCATATTGGGCACCAGAATATGCAGAATTTGGTAAAGTGTCAATTAAGACAGATGTGTATTCTTTTGGGGTGGTTCTACTACAGCTAATAACAGGAATGAGGACCACAGACAGACGACTTGGAGAAAAAGGTCTAGTAGGATGGGCAAGATCAGCACTAAGAGAAGGGAAATGTCAAACACTTATTGATGGAAGGATGATGAACTCCCATGACTGCCATCAACTATATTGGATGTGCCGTCTGGCTGGAAATTGTCTCAAGAAAGATCCCCATAAGCGATTGGATATGAGTACAGTGGTCAAAGCCTTAAATCATATAGTGGAAGGTTGCAATTGCTGCATTGTGGGTAAAGACCATACCCTTGCCATGTCAGGCTATTCTAAGTCCAAAGATGATATGTTGGGCTCTTCAGATTCAGAAGGTGGTGAAAGTGGAAATATTGGTACATCCAACAGTGCAAAATTGAAAGAGAAAGCTAAATAA 1143 0.4156 MSHPFTPVKQENQQANKHEAPQMVEQLGSFVCSVCNNMRPKFEWKRDFTYAELHVATQGFSPKNFLSEGGFGSVYRGELQGQKIAVKQHMHESYKGEKEFKSEVDALSNARHENVVMLLGSCSEGNHRLLVYEYVCNGSLDQHLSPEHSRKPLCWQDRMKIANGAAKGLLYLHENSIIHRDITPNNILLTHDYEVLLGGFGLARIVTEESSCSIDCDGNLAYWAPEYAEFGKVSIKTDVYSFGVVLLQLITGMRTTDRRLGEKGLVGWARSALREGKCQTLIDGRMMNSHDCHQLYWMCRLAGNCLKKDPHKRLDMSTVVKALNHIVEGCNCCIVGKDHTLAMSGYSKSKDDMLGSSDSEGGESGNIGTSNSAKLKEKAK. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07758 380 PANTHER OS01G0253100 PROTEIN 22 327 - -
Seca3g07758 380 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 135 339 - -
Seca3g07758 380 Gene3D Transferase(Phosphotransferase) domain 1 135 336 - -
Seca3g07758 380 SUPERFAMILY Protein kinase-like (PK-like) 45 325 IPR011009 -
Seca3g07758 380 MobiDBLite consensus disorder prediction 351 380 - -
Seca3g07758 380 Gene3D Phosphorylase Kinase; domain 1 32 134 - -
Seca3g07758 380 PIRSF ILK 5 339 - -
Seca3g07758 380 MobiDBLite consensus disorder prediction 359 373 - -
Seca3g07758 380 Pfam Protein tyrosine and serine/threonine kinase 64 323 IPR001245 GO:0004672|GO:0006468
Seca3g07758 380 ProSiteProfiles Protein kinase domain profile. 60 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07758 380 ProSitePatterns Tyrosine protein kinases specific active-site signature. 177 189 IPR008266 GO:0004672|GO:0006468
Seca3g07758 380 FunFam Proline-rich receptor-like protein kinase PERK8 22 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07758 Seca-Chr3 193087944 193091320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07758 48 333 Trihelix Transcription Factor Family AT5G38560 42.809 4.37e-70 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca3g07758 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07758 - - cam:101502867 558.14