Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07757 ATGAGTCAAATGAGAAATGAAATCGAAGATGAGGTGCTCTGCAATGATCAGAGTCATCAGACTAGGTCCCGGTTGAACGATGACGGTAACGGAGGAAGTGATGATGGAATTGGTCTGAAGAGAGGACCATGGACACCTGCAGAAGATGCTATCTTGATTGACTATGTCAAGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGTACTCAGGCCTGTCTCGTTGCGGCAAAAGTTGTCGACTGCGATGGGTAAATCACCTAAGGCCAGATTTAAAGAAAGGGGGGTTTACTGCAGAAGAGGAGCAGATGATTGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGTATGGCAGCACATTTGCCTGGTCGTACAGATAATGAAATAAAAAACTACTGGAACACCCGGATCAAGAGGTGTCAAAAGGCTGGCTTGCCACTTTATCCTCCTGAAGTGTCTTTCCGAGCATTGCAAGAGAGTCAGCATAGTCAAGCTAGTGGTGGAATTAGTGATGGAGATAAAGGGCATCATGATTTCTCGCCAAAAATCAACTATGATGCAATGTTTGACGGTTTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTGAGCTTCCTGATATTTCTGCTAATAGCATTATGTTAAGCTGCCTTGGTTCTCCTCCATATTGTAATTTTGTGCCATCAAATTTACCTAACCAAAGTCATCTTCAAGAGTCAACAATGTCTTTTCTTGGTTCCTGTGGTACAAACAGGAATGGGTTTTATCCATTTGACCATATTGAGGATAATACTTCTGATAAGACTGCACAATCATTTGCATTGCAATCTCACTTTGATCCTGGTTCCTCCTCACATAGCCCAATTTGTTACAGTCACTCACTATCAAGTGGCAATTCCTCTACTTCTAAGCCAACTACCGAGGCTGTGAAGTTGGAGCTCCCTTCATTCCAATATCCAGAAACCGATTTTGGTAGCTGGGGTACCACTCCCCGACCACCATTGAATGAGTTTATTGATGTTTTCATTCAGTCTCCTCCGCCACCTGGTGCACTAGATTCAGGCTGTTCTTCACCTCATAATAGTGGCTTGCTTGATGCCTTACTTTATCAGGCTAAGACTCTTGCTTGTTCAAAGAACAATTGTTCTGACAAGAGTTCAAATTCATCTACTGCAACTCCTGGTCACAGAGCTGAGAGTTCTGCTTTGAACATGTATGAGACAGAGTGGGAGGACTATGGTGACCCTGTATCTCCCTTCGGTGCAACTTCAATCCTGAATGAGTGTCATACTGTTAGCACCAATGGAAATTCAAGGGATAAATGGGCACCTGTTCGGAACTTTAGTGGCAACAATGTGAAATTAGAGTCTGTTGACCAAGTTTGCACCCTGACGAGTGAAAATCAAGCCATGTCTTTGTTGAATATCACTTGGCCAGACGTCTTGTTAGCTTCAGATTGGCGGGAGCAATGTTCTGGGCATGGCAATAACTGA 1500 0.438 MSQMRNEIEDEVLCNDQSHQTRSRLNDDGNGGSDDGIGLKRGPWTPAEDAILIDYVKKHGEGNWNAVQKYSGLSRCGKSCRLRWVNHLRPDLKKGGFTAEEEQMIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQKAGLPLYPPEVSFRALQESQHSQASGGISDGDKGHHDFSPKINYDAMFDGLKENQGILPFVPELPDISANSIMLSCLGSPPYCNFVPSNLPNQSHLQESTMSFLGSCGTNRNGFYPFDHIEDNTSDKTAQSFALQSHFDPGSSSHSPICYSHSLSSGNSSTSKPTTEAVKLELPSFQYPETDFGSWGTTPRPPLNEFIDVFIQSPPPPGALDSGCSSPHNSGLLDALLYQAKTLACSKNNCSDKSSNSSTATPGHRAESSALNMYETEWEDYGDPVSPFGATSILNECHTVSTNGNSRDKWAPVRNFSGNNVKLESVDQVCTLTSENQAMSLLNITWPDVLLASDWREQCSGHGNN. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07757 499 Gene3D - 41 93 - -
Seca3g07757 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 92 IPR017930 -
Seca3g07757 499 MobiDBLite consensus disorder prediction 9 23 - -
Seca3g07757 499 CDD SANT 97 137 IPR001005 -
Seca3g07757 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 143 IPR017930 -
Seca3g07757 499 Gene3D - 96 142 - -
Seca3g07757 499 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Seca3g07757 499 SUPERFAMILY Homeodomain-like 38 135 IPR009057 -
Seca3g07757 499 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Seca3g07757 499 Pfam Myb-like DNA-binding domain 94 137 IPR001005 -
Seca3g07757 499 MobiDBLite consensus disorder prediction 1 41 - -
Seca3g07757 499 CDD SANT 43 88 IPR001005 -
Seca3g07757 499 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 17 496 - -
Seca3g07757 499 ProSiteProfiles Myb-like domain profile. 36 88 IPR001005 -
Seca3g07757 499 FunFam MYB-related transcription factor 40 93 - -
Seca3g07757 499 SMART sant 40 90 IPR001005 -
Seca3g07757 499 SMART sant 93 141 IPR001005 -
Seca3g07757 499 FunFam Transcription factor GAMYB 96 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07757 Seca-Chr3 193082039 193087078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07757 39 495 MYB Transcription Factor Family AT3G11440 43.724 4.51e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g07757 Myb_DNA-binding 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07757 K09422 - gmx:100805804 702.205