LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g07749	ATGTCTGGGAAGAAAGAGAAACAGAAAGACAGCGATAGCGAGGAAGACGACATATTCTACTACCGTTATTGCGCTGCATCATCCACCTCCTCAAAAATCGACGCCGCAAACGCAACCCAGACCCAACCCATACCCAAGAACAACAAGGGAGGATCAGGGTCGTTGGCTCCGTCGAAATCAACGGTCTACGTTTCGAACCTGGACTATTCCCTAACTAACTCCGACCTCCACATTCTTTTCTCAACCTTCGGCCGCATCGCCCGCGTAACCGTCCTCAAAGACCGCCACACGCGCCTCAGCCGCGGCGTTGCCTTCATCCAGTTCGTTTCTCGCCACGACGCTCGCCGTGCCGCCTCTGAAATGCACCATAAGATCCTCAACGGCCGCACTCTCACCGCCTCCATCGCCGCCGATAACGGCCGCGCCCCCGAGTTCATCCGCAAGCGCGTGTACACTGACACCGCCCGCTGCTTCGAGTGTGGGGCTTCCGGCCACCTCTCTTATGAATGCCCGAGGAACCAATTGGGCCCTCGTCCCCGTCCCCAGCCCAAGCGGACCCGCCGAGGGTTCGGACGGCCCAAGGACGAGGAGGAGGATGAGGACGATGACGACGGCGGTGGAATTGGCGGTAGGGAGCGGTTTGAGGATGACAACTGGGCTTCTGTCGTGGATGACGGAGCGGATGAGAGGCTGTTGGGGAGGAGCGGAAAGGACGAGGTTGTGGCCAAGAAGAAGGCTAAGAAAGCTGGCTACTTCAGTGACGAAAGTGACCATGAGGATGATGATGATTGA	792	0.5808	MSGKKEKQKDSDSEEDDIFYYRYCAASSTSSKIDAANATQTQPIPKNNKGGSGSLAPSKSTVYVSNLDYSLTNSDLHILFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRHDARRAASEMHHKILNGRTLTASIAADNGRAPEFIRKRVYTDTARCFECGASGHLSYECPRNQLGPRPRPQPKRTRRGFGRPKDEEEDEDDDDGGGIGGRERFEDDNWASVVDDGADERLLGRSGKDEVVAKKKAKKAGYFSDESDHEDDDD.	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g07749	263	FunFam	U11/U12 small nuclear ribonucleoprotein 31 kDa protein	3	144	-	-
	Seca3g07749	263	SMART	c2hcfinal6	156	172	IPR001878	GO:0003676\|GO:0008270
	Seca3g07749	263	SUPERFAMILY	RNA-binding domain, RBD	37	143	IPR035979	GO:0003676
	Seca3g07749	263	Gene3D	-	147	185	-	-
	Seca3g07749	263	PANTHER	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	9	260	IPR044598	GO:0000398\|GO:0005689
	Seca3g07749	263	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	62	131	IPR000504	GO:0003723
	Seca3g07749	263	MobiDBLite	consensus disorder prediction	206	255	-	-
	Seca3g07749	263	SUPERFAMILY	Retrovirus zinc finger-like domains	141	173	IPR036875	GO:0003676\|GO:0008270
	Seca3g07749	263	Gene3D	-	28	215	IPR012677	-
	Seca3g07749	263	ProSiteProfiles	Zinc finger CCHC-type profile.	156	172	IPR001878	GO:0003676\|GO:0008270
	Seca3g07749	263	Pfam	Zinc knuckle	157	171	IPR001878	GO:0003676\|GO:0008270
	Seca3g07749	263	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	60	138	IPR000504	GO:0003723
	Seca3g07749	263	MobiDBLite	consensus disorder prediction	169	263	-	-
	Seca3g07749	263	SMART	rrm1_1	61	134	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g07749	Seca-Chr3	192685422	192686213	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g07749	59	122	Eukaryotic Initiation Factors Gene Family	AT3G11400	42.188	3.79e-09	54.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g07749	K13154		-	psat:127137475	308.145