Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07738 ATGTCTTCCTTCAAATCCTACGGGAAAGTTGATGAACACGAGCAAATGGTGTTGGAAGCCAAGAGGAAAACCCGAAAGAGAATCACAATCATAACCTTGTCCACAATAATCCTCGCTGGTGTTGTATTTGCTGCTGTATTTGGAATCGTTAGCAACTCTAGTGACAACTCACAAAATGCTCCTCAATCTGTGGCCAATTCAGTGAAGGCTGTTTGTGATGTGACACTGTATAAGGACTCATGTTACAGAAGCCTTGGCTCTGTTGTGGACTCTGCAGGCCAGGTTCAGCCTGAGGACCTGTTCAAGTTGTCCATCAAAGTGGCCTTAACTGAAGTGTCTAAAGCTGTTGAGTATTTCAATGAGCATGGAGTTTTCAAAGGCTTGAATACTGATAGCAGGACTAAAGAAGCTTTGAAAAATTGCAGGGTTCTTTTGGATCTTGCAGTCGATCACTTAAATAGCACTTTGATTTCTGGAGAAAATTCTTCCCTTCTTGACGTTTTTGAGGATCTTCAAACATGGTTAAGTGCTGCAGGAACATACCAGCATACATGCATTGAAGGCTTTGAGGATGCAAAAGAAGCACTGAAGGCAAGTGTAGTAAGCTATCTTAAAAACTCTACAGAGTTCACCAGCAACAGTCTTGCCATCATTACCTGGATTAACAAGGCTGCAACCACACTGAACTTGAGGCGCTTACTGAGTTTACCTTATCAGAATGAAGCACCGGAATGGCTTCATTCAAAAGACAGGAAGCTTCTTAGAACACAGGATTTGAAGTGGAAAGCTGATATTGTTGTGGCTAAAGATGGCAGTGGGAAATATAAAACTATTTCTGCTGCACTTAAACATGTTCCTAATAAGAGTAACAAGAGGACTGTGATCTATGTGAAGAAAGGGATTTACTATGAAAATGTGAGGGTAGAGAAGACCAAATGGAATGTAGTGATGATTGGTGATGGAATGACTGCTACACTTGTATCTGGCAGGCGTAACTTTGTGGATGGCACCCCAACATTTTCAAGTGCAACATTTGCTGTGTTTGGAAGGAATTTCATAGCTAGAGACATGGGGTTTTGCAACACAGCTGGTCCTCAAAAGCATCAAGCAGTAGCACTGATGACAAGTGCTGATCAAGCAGTGTACTATAGGTGTCACATTGATGCATTTCAGGACACTCTCTATGCTCATTCCAATCGCCAATTCTATAGAGAATGCAACATCTATGGGACAGTTGATTTCATTTTTGGAAATTCTGCAGTTGTGATCCAAAACTGCAATATTTTTCCAAAGTTACCTATGCATGGCCAGCAGAACACAATCACAGCACAGGGAAAAATTGACCCAAACATGAACACAGGGATCTCAATTCAAAATTGCAAAATTTCACCCTTTGGGAACTTGAGTACTGTCCAAACATACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTACATGAGATCCAGAATGGAAAGTTTTATTAACCCAAATGGCTGGTTACCTTGGGTAGGGAACTCAGCACCAGACACCATTTTTTATGCAGAATTTCAGAATGTTGGTCCAGGTGCTTCAACAAAGAATAGGGTGAAATGGAAGGGTTTGAGAACCATTACTAGTAAACAAGCCAGCAAGTTTACAGTCAAGGCTTTTCTTCAAGGAGATAGATGGATTCCTGCATCAGGTGCACCCTTCAAGTCTGATCTGTGA 1713 0.4156 MSSFKSYGKVDEHEQMVLEAKRKTRKRITIITLSTIILAGVVFAAVFGIVSNSSDNSQNAPQSVANSVKAVCDVTLYKDSCYRSLGSVVDSAGQVQPEDLFKLSIKVALTEVSKAVEYFNEHGVFKGLNTDSRTKEALKNCRVLLDLAVDHLNSTLISGENSSLLDVFEDLQTWLSAAGTYQHTCIEGFEDAKEALKASVVSYLKNSTEFTSNSLAIITWINKAATTLNLRRLLSLPYQNEAPEWLHSKDRKLLRTQDLKWKADIVVAKDGSGKYKTISAALKHVPNKSNKRTVIYVKKGIYYENVRVEKTKWNVVMIGDGMTATLVSGRRNFVDGTPTFSSATFAVFGRNFIARDMGFCNTAGPQKHQAVALMTSADQAVYYRCHIDAFQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIFPKLPMHGQQNTITAQGKIDPNMNTGISIQNCKISPFGNLSTVQTYLGRPWKNYSTTVYMRSRMESFINPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLRTITSKQASKFTVKAFLQGDRWIPASGAPFKSDL. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07738 570 NCBIfam pectinesterase inhibitor domain 41 221 IPR006501 GO:0004857
Seca3g07738 570 FunFam Pectinesterase 64 222 - -
Seca3g07738 570 Pfam Plant invertase/pectin methylesterase inhibitor 67 217 IPR006501 GO:0004857
Seca3g07738 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 222 IPR035513 -
Seca3g07738 570 SUPERFAMILY Pectin lyase-like 262 567 IPR011050 -
Seca3g07738 570 PANTHER PECTINESTERASE 39 560 - -
Seca3g07738 570 CDD PMEI-like_3 70 223 - -
Seca3g07738 570 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Seca3g07738 570 Gene3D - 259 570 IPR012334 -
Seca3g07738 570 SMART PMEI_2 63 217 IPR006501 GO:0004857
Seca3g07738 570 FunFam Pectinesterase 258 570 - -
Seca3g07738 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 221 IPR035513 -
Seca3g07738 570 Pfam Pectinesterase 264 556 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07738 Seca-Chr3 192198857 192201373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07738 7 570 Carbohydrate Esterase AT3G10710 56.842 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07738 - - gmx:100811152 959.133