Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07737 ATGTCACCACCACCATTTTCATTTTCACTCTGTCTCACCTTTCTCTTACTCTTTGCACCATTACTCCTAGCTCAATCTCCATCAAACAATGCTTCTCCTTCATCTTCTGCTGCTTCTGCTTGCAAGTTCACAATGTATCCAAAACTCTGCCGTTCCATACTCTCAGCTATCCGTTCCTCACCATCTGATCCATATGGCTATGGCAAGTTTTCCATCAAACAGAGCCTCAAACAGGCAAGGAAACTATCCAAAGTGTTTGAGGATTTCCTCAAACGCCACCAATCTTCCTCTCTAAACCATGCTGAGATTGCTGCATTAGGTGATTGCAGAGACCTCAATCAACTCAATGTGGACTACTTGGGGTCCATCTCAGAGGAGCTAAAATCAGCTGGTTCTAACACAGAACTGGTTGAGAAAATTGAAAGCTATTTGAGTGCTGTGGCCACAAACCATTACACATGCTATGACGGGTTGGTGGTGACTAAGAGCAACATTGCAAATGCTCTTGCTGTTCCACTCAAGGATGGGACTCAATTGTATAGTGTCTCACTTGGGTTGGTCACTGAGGCTCTTAACAAAAACTTCAAGATGAATAAAACACGCAAACATGGCCTTCCTACAAAGTCCTTCAAGGTTAGGCAGCCACTTGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGGTGCAATAAATCATCCAATTGTACTAGAACTGAAAGGATTCTTAAAGAAAGCAGTAGCCAGGGAATTCTATTGTACGATTTTGTGATTGTGAGCCCTTATAATGGGACAGACAACTACACTTCCATTGGAGATGCTATTGCTGCTGCACCCAATAACACACAGCCACAAGATGGCTATTTCCTTATCTATGTTAGAGAAGGATACTATGAGGAATATGTAATTGTTCCCAAAGAAAAGAATAATATCCTGTTAGTAGGAGATGGTATTAACAAGACTGTCATCACAGGGAACCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCCACATTTGCTGTTGCTGGAGAAAGATTTATAGCAGTGGATATTACATTCAGAAACACAGCTGGTCCTGAAAAGCACCAAGCAGTAGCAGTGAGGAACAATGCTGACCTTTCCACATTCTACCGTTGTAGTTTTGAAGGATATCAAGACACACTCTATGTTCACTCTTTGAGGCAATTTTATAGGGATTGTGATATCTATGGTACTGTGGATTTCATTTTTGGCAATGCTGCTGTGGTCTTCCAGAACTGTAACATCTATGCCAGAAAACCATTACCAAACCAGAAGAATGCTGTCACAGCACAAGGCAGAACTGATCCCAATCAAAACACTGGCATTTCAATCCAAAACTGCACAATTGATGCTGCACCAGACTTGGCTGAAGACTTAAATTCCACCATGAGTTACTTAGGCCGGCCATGGAAGTTGTATTCAAGAACTGTGTATCTGCAGTCATATATTGGAGATCTAATTCAACCTTCTGGATGGTTAGAGTGGAATGGGACAGTTGGGTTAGACACCCTCTTTTATGGTGAGTTCAATAACTATGGACCAGGTTCTAACACTAACGATAGAGTACAATGGCCTGGTTACTCTCTGTTGAATGCTACTCAAGCTTGGAACTTCACAGTCCTTAATTTTACATTGGGAAATACATGGCTTCCTGACACAGATATACCCTATGCTGAAGGATTACAAAATTAG 1716 0.4155 MSPPPFSFSLCLTFLLLFAPLLLAQSPSNNASPSSSAASACKFTMYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQARKLSKVFEDFLKRHQSSSLNHAEIAALGDCRDLNQLNVDYLGSISEELKSAGSNTELVEKIESYLSAVATNHYTCYDGLVVTKSNIANALAVPLKDGTQLYSVSLGLVTEALNKNFKMNKTRKHGLPTKSFKVRQPLEKLIKLLRTKYRCNKSSNCTRTERILKESSSQGILLYDFVIVSPYNGTDNYTSIGDAIAAAPNNTQPQDGYFLIYVREGYYEEYVIVPKEKNNILLVGDGINKTVITGNHSVIDGWTTFNSSTFAVAGERFIAVDITFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAEDLNSTMSYLGRPWKLYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEFNNYGPGSNTNDRVQWPGYSLLNATQAWNFTVLNFTLGNTWLPDTDIPYAEGLQN. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07737 571 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Seca3g07737 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 189 IPR035513 -
Seca3g07737 571 SMART PMEI_2 32 186 IPR006501 GO:0004857
Seca3g07737 571 NCBIfam pectinesterase inhibitor domain 11 170 IPR006501 GO:0004857
Seca3g07737 571 PANTHER PECTINESTERASE 19 559 - -
Seca3g07737 571 Gene3D - 256 571 IPR012334 -
Seca3g07737 571 Pfam Plant invertase/pectin methylesterase inhibitor 38 185 IPR006501 GO:0004857
Seca3g07737 571 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Seca3g07737 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Seca3g07737 571 CDD PMEI-like_3 41 189 - -
Seca3g07737 571 FunFam Pectinesterase 252 569 - -
Seca3g07737 571 Pfam Pectinesterase 260 554 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07737 Seca-Chr3 192192357 192198973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07737 40 569 Carbohydrate Esterase AT3G10720 63.687 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07737 K01051 - gmx:100816503 981.859