Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07732 ATGGATATAGATCTCAGGTTACCTTCTGGTGAACATGATAAAGAGGATGAAGAGACGACTACAATTGATAACATGTTGGATGGTGAAGAAAAATTGCATAATGGAGGTATAGATGGCAGAAATATGGTTGATGCTGGTATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCGCCAACAGTTGATATGGTAATGTTTAAGGAAGATGCCAATCTCGAGCCACTTTCTGGCATGGAATTTGAGTCTCACGGGGAAGCATATTCTTTCTACCAAGAATATGCCCGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGCCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCTAGATATGGAACAAAGCGAGAGTATGACAAATCATTCAATCGACCACGTGCACGACAGAACAAGCAAGATTCTGAAAATTCAACTGGTCGAAGATCTTGTTCTAAGACTGATTGTAAAGCAAGCATGCATGTGAAAAGAAGGCCTGATGGAAAATGGGTTATACATAGCTTTGTGAAGGAGCATAATCATGAACTTTTACCAGCCCAAGCAGTCAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCTAGGCAGTTTGCTGAATATAAAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGGAATTTGGGCCTGGAGTTAGGGGAGGCTAAACTTATGCTTGATTTTTTTATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAAAAATCTTTTATGGATTGACGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTAGTCTCATTTGATACCACCTATGTTAGGAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGCGTGAACCAGCACTACCAATTTATATTACTTGGGTGTGCCTTGATATCAGATGAAAGTGCTGCAACTTTTTCTTGGCTAATACGGACGTGGCTGAAAGGAGTTGGTGGTCAAGTTCCGAAAGTGATAATTACTGACCACGACAAGACTTTGAAGTCAGTTATATCAGATATCTTTCCTAATTCTTGTCATTGTGTTTGCTTATGGCATATATTGGGTAAGGTATCTGATAATTTAGCTCCTGTAATTAAAAAACATGAGAATTTTATGGCAAAATTTGAAAAATGCATATTCAGGTCATTGACCAGTGATGATTTTGAAAAGAGATGGTGGAAAATTGTTGATAGGTTTGAACTTCGAGAGGATGAATGCATGCAGTCATTGTATGAAGATCGCAAGTTATGGGCACCAACATTCATGAAGGATGTTTTCTTAGGTGGTATGTCTACTGCCCAGCGATCTGACAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTGCAGGATTTTGTCAAACAGTATGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAAGTGGCAACATTAAAAACTCCTTCACCTTTAGAGAAGAGTGTTGCAGGGATTTGCACACATGCTGTATTCAAGAAGATTCAAGTTGAGGTTGTTGGCGCAGTTGCTTGTCATCCTAAAGTTGACAGGCAGGATGAGACGATTGTTGTTCACAGGGTTCATGATATGGAAACAAATAAAGACTTTTTTGTTGTTGTGAATGAAGTAAAATCAGAGGTGTCTTGTATATGTCGGTTATTTGAATATAAAGGTTATCTTTGTCGACATGCATTGGTGGTTCTTCAATATTCTGGCCATTCAGTGTTTCCATCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGGTCAGGAATATAATGGGAGAAGAATCTGAGCATATGCTGGCTAGGGTGCAACGATACAATGATTTATCTCAGCGAGCACTAAAACTGAGTGAGGAGGGATCATTGTCTCAAGAGAGTTATAGTATTGCATTCCATGCACTACACGAGGCACACAAAAGTTGTGTTAGTGTTAACAATTCTAGTAAGAGTCCTACTGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCACGGAAGAAGATACCCAAAGTAGAAATATGGGCAAGTCAAACAAAAAGAAAAATCCAACTAAAAAGAAAAAGGTGAACTCTGAGGCAGAAGTAATGACTGTTGGAGCACTGGACAACTTGCAACAAATGGACAAATTCAACACAAGAGCTGCAGTAACCCTTGAAGGTTATTATGGAACGCAACAGAGTGTGCAGGGGATGGTATGA 2304 0.3872 MDIDLRLPSGEHDKEDEETTTIDNMLDGEEKLHNGGIDGRNMVDAGIEVHALNGGDLNSPTVDMVMFKEDANLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLELGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDESAATFSWLIRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPNSCHCVCLWHILGKVSDNLAPVIKKHENFMAKFEKCIFRSLTSDDFEKRWWKIVDRFELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTAQRSDSVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGICTHAVFKKIQVEVVGAVACHPKVDRQDETIVVHRVHDMETNKDFFVVVNEVKSEVSCICRLFEYKGYLCRHALVVLQYSGHSVFPSQYILKRWTKDAKVRNIMGEESEHMLARVQRYNDLSQRALKLSEEGSLSQESYSIAFHALHEAHKSCVSVNNSSKSPTEAGTSGAHGQLSTEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMTVGALDNLQQMDKFNTRAAVTLEGYYGTQQSVQGMV. 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07732 767 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Seca3g07732 767 MobiDBLite consensus disorder prediction 132 164 - -
Seca3g07732 767 Pfam SWIM zinc finger 569 602 IPR007527 GO:0008270
Seca3g07732 767 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 677 IPR031052 GO:0006355
Seca3g07732 767 Pfam MULE transposase domain 288 380 IPR018289 -
Seca3g07732 767 SMART 26again6 579 606 IPR006564 GO:0008270
Seca3g07732 767 MobiDBLite consensus disorder prediction 677 726 - -
Seca3g07732 767 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Seca3g07732 767 MobiDBLite consensus disorder prediction 677 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07732 Seca-Chr3 191962816 191973193 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g07732 FAR1 1.9e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07732 - - gmx:100817034 1460.28