Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07730 ATGTATTCACTGCCACCTCCACCAGAGAAAATTCCCCCAAATTTTGTTCCTCTGATCGCAGAATCAGCAAGAATGGAGCCAATGAAAAAGACATCTGATACAAAACTTTTGCCTGTGGCTTGGAGAGGTATTGGAACCAAAGGACACAAGATACGACTCTTAGCTAACCATTTTCGAGTTGCTATGAGCAAGAACGATGGCTACTTCTATCATTACAGTGTTGACATGTGGTATGAAGATGGCCTCCCGGTTGAAGGGAAGGGTGTTGGGAGAAAGGTCATAGATAAACTTTGTGAAACATACTGTGTGTTACAAAACAAGAACTTCGCATATGATGGTGAGAAAAGCTTATTCACTGTTTGTTCTCTACCACATAATAAGCAGGAGTTTGTTGTTGTGTTAGGGGAAGTTTCAACAAAGAGGGTTGGAGGGAGTGCAATCGCTCAAATCAAGAGCATGACACGTCAATCTCAGTCAAAAACTATTAAGGTGGAGATAAGTTATGCAGCCAAAATCCCATTGCAAGCAATTGCAAATGCATTACGTGGTCACGATTCTGTGCATTCCCAAGAAGCATTAAGGGTTCTGGACATCATACTGAGGCAGCATGCAGCAGAGCAAGGATGTCTCCTTGTTCGCCAATCCTTCTTTCATGACAATCCAAGAAATTATACTGATATAGGAGGTGGTATTCAAGGTTGTCGTGGTTTCCATTCAAGCTTCCGAGCTACACAAGGGGGTTTATCTCTGAATGTTGATGTGTCAAATACAATGGTTGTAAAGCCTGGTCCTGTGCTGGACTTCCTTCTCGAGAATCAGAATGTTCAACGACTAAACTTAATTGATTGGGCCAAGGCCAAAAGAGTGCTGAAAAGCCTCAAAATTAAGGTTAATAATATTGAGTACAAAATTACTGGACTGAGTGAGAAGCCCTGCAGGACACAGACCTCATTTGTGTGCTACAGATTTTTATTAAAACATGGAAGGGATGCCAATGGTGAAGTGCAGTCAAGTGAGATCACGGTTTATGACTACTTTAAACGCCATAAAAAGATTGAACTGCGCTATTCTGCTGATTTTCCATGCATCAATGTTGGCAAACCAAAGCGCCCGACTTATTTTCCTGTAGAGCTATGCACATTGGTCTCATTGCAAAGGTATACCAAGGCACTCACAAATTTGCAAAGGGCTCAGTTGGTGGAGAAATCAAGGCAAAAGCCCCCTGAAAGGAATGCAGCCTTGCAAGATTCCTTAAGAAGCAGCAGATATGGTAATTATCCTATGCTTCGGTCTTCTGGGATCAACATTGAACCTAACTTAATTCAAGTTGATGGACGTGTTCTGCAAGCTCCAAGGCTTGTAGTTGGACGCACAGAGGACTTTCTTCCACGGAATGGGCGCTGGAATTTCAACAATAAGAAACTATTTGAACCTGTGAAGATTGAGCGCTGGGCCATTGAAAACTTCTCAGCTCGGTGTGATACAAGACATCTATGCAACACTCTTAGGAATTGTGCTACAATGAAAGGGATGTTCTTAAGTCCTCCATTCCAAATATTTGAAGAGGATAGTCGCTTCAGGCGTGATCCAGCACATGTCAGGGTTGACAAAATGTATGAAATTTTAAAGGCCAAGATGCCTAAGAACCCTCCGACTCAGCTTCTATTATGTATTCTTCCAGAGAGAAAGAATTCTGCTATTTATGGGCCTTGGAAAAGGAGAAATCTGGTTGATGAAGGAGTTGCAACACAATGTATTGCACCAACAAATATTAATGATCAATATATTACTAATGTTCTGTTGAAAATTAATGCAAAGCTTGGTGGCTTGAATTCCTGTCTGTCAATAGAGGACTCGCGTTCCATACCTCTAGTTTCTAATGTTCCTACCTTGATTCTTGGAATGGATGTTTCACATGGATCTCCTGGTAGATCAGATGTGTCATCTATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCTCGTTATAGAGCTGCAGTTCGTACTCAGTCATCCAAAGTTGAGATGATTGCATCTCTATTTAAGCCTGTTTCTGGTAACAAGGATGATGGTATCATAAGGTTGTCTTCATTCTGCAGGGAGTTGCTTTTGGACTTTTACCGGAGTTCAAGACAAACCAAGCCTAAACATATAATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAAGTCCTGAACATTGAATTGGATGAAATCATTAAGGCATGCAAACATCTTGATGAGAAGTGGACTCCAAAGTTTACTTTGATTGTTGCGCAGAAGAGACATCATACTAGGTTCTTCCTGACCAACTCTACAGAAAACATTCCAAATGGAACTGTCATTGACAGCAATATTTGTGATCCCAAAAACAATGACTTCTACATGTGTGCTCATGCTGGGAAGATTGGGACAAGTCGACCTACTCATTACCATGTTTTACATGACGAAATCGGGTTCTCAACAGATGATTTGCAAGAACTTGTGCATTCTCTATCTTATGTGTATCAGAGGAGTACAACTGCCATATCAATAGTTGCCCCCGTTTACTATGCTCACTTGGCAGCTGCCCAGATGGCCCAATTTATCAAGTTTGATGAAATGTCTGATACTTCTTCCAGCTATGGTGGACTCACATCTGTTGGTGTACCTCAAGTTCCTCAACTACCCCGCCTTCACGAAAATGTCATTAACTCCATGTTCTTCTGTTAA 2724 0.4148 MYSLPPPPEKIPPNFVPLIAESARMEPMKKTSDTKLLPVAWRGIGTKGHKIRLLANHFRVAMSKNDGYFYHYSVDMWYEDGLPVEGKGVGRKVIDKLCETYCVLQNKNFAYDGEKSLFTVCSLPHNKQEFVVVLGEVSTKRVGGSAIAQIKSMTRQSQSKTIKVEISYAAKIPLQAIANALRGHDSVHSQEALRVLDIILRQHAAEQGCLLVRQSFFHDNPRNYTDIGGGIQGCRGFHSSFRATQGGLSLNVDVSNTMVVKPGPVLDFLLENQNVQRLNLIDWAKAKRVLKSLKIKVNNIEYKITGLSEKPCRTQTSFVCYRFLLKHGRDANGEVQSSEITVYDYFKRHKKIELRYSADFPCINVGKPKRPTYFPVELCTLVSLQRYTKALTNLQRAQLVEKSRQKPPERNAALQDSLRSSRYGNYPMLRSSGINIEPNLIQVDGRVLQAPRLVVGRTEDFLPRNGRWNFNNKKLFEPVKIERWAIENFSARCDTRHLCNTLRNCATMKGMFLSPPFQIFEEDSRFRRDPAHVRVDKMYEILKAKMPKNPPTQLLLCILPERKNSAIYGPWKRRNLVDEGVATQCIAPTNINDQYITNVLLKINAKLGGLNSCLSIEDSRSIPLVSNVPTLILGMDVSHGSPGRSDVSSIAAVVSSRCWPQISRYRAAVRTQSSKVEMIASLFKPVSGNKDDGIIRLSSFCRELLLDFYRSSRQTKPKHIIIFRDGVSESQFNQVLNIELDEIIKACKHLDEKWTPKFTLIVAQKRHHTRFFLTNSTENIPNGTVIDSNICDPKNNDFYMCAHAGKIGTSRPTHYHVLHDEIGFSTDDLQELVHSLSYVYQRSTTAISIVAPVYYAHLAAAQMAQFIKFDEMSDTSSSYGGLTSVGVPQVPQLPRLHENVINSMFFC. 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07730 907 SMART Piwi_a_2 554 868 IPR003165 GO:0003676
Seca3g07730 907 FunFam Protein argonaute 3 622 907 - -
Seca3g07730 907 SUPERFAMILY Ribonuclease H-like 537 866 IPR012337 -
Seca3g07730 907 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 35 870 - -
Seca3g07730 907 Pfam Mid domain of argonaute 463 511 IPR032473 -
Seca3g07730 907 CDD PAZ_argonaute_like 262 382 - -
Seca3g07730 907 Gene3D - 447 615 - -
Seca3g07730 907 SMART DUF1785_2 210 262 IPR014811 -
Seca3g07730 907 ProSiteProfiles PAZ domain profile. 323 383 IPR003100 GO:0005515
Seca3g07730 907 Pfam PAZ domain 266 399 IPR003100 GO:0005515
Seca3g07730 907 Pfam N-terminal domain of argonaute 50 200 IPR032474 -
Seca3g07730 907 Gene3D paz domain 256 387 - -
Seca3g07730 907 Pfam Argonaute linker 1 domain 212 260 IPR014811 -
Seca3g07730 907 CDD Piwi_ago-like 427 862 IPR045246 -
Seca3g07730 907 SUPERFAMILY PAZ domain 257 422 IPR036085 GO:0005515
Seca3g07730 907 ProSiteProfiles Piwi domain profile. 554 868 IPR003165 GO:0003676
Seca3g07730 907 Pfam Piwi domain 555 868 IPR003165 GO:0003676
Seca3g07730 907 Gene3D - 621 907 IPR036397 GO:0003676
Seca3g07730 907 Pfam Argonaute linker 2 domain 409 453 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07730 Seca-Chr3 191898741 191904684 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07730 43 907 Eukaryotic Initiation Factors Gene Family AT5G43810 36.142 3.48e-157 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07730 K11593 - vvi:100241029 1204.12