Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07727 ATGCTTCGGTCTTCTGGGATCAACATTGAACCTAACTTTATTCAAGTTGATGGACGTGTTCTGCAAGCTCCAAGGCTTGTAGTTGGACAGGGAGAGAACTTTTTCCCCCGCAATGGGCGCTGGAATTTCAACAATAAGAAACTAGTTGAACCTTTCAAGTTAGAGCGCTGGGCCATTGTAAACTTCTCAGCTCGGTGTGATATACGACACCTGTGCAACACCATTAAGAATTGTGCTGCAATGAAAGGGATGGACTTAGCTCCTCCATTCAAAATATTTGAAGAGGATGGTTGTTTCAGGCGTGAGCCAGCACATGTCAGGGTTGACAAAATGTATGCAATGTTAAAGCCCAAGCTGCCTGGGGTCCCTCAGCTTCTGCTGTGTATTCTTCCAGAGAGAAAGAATTCTGATATTTATGGTCCTTGGAAGAGGAGAAGTCTGGTTGATGAAGGAATTGCAACACAATGTATTGCGCCAACAAAAATTAATGATCAGTATATTACTAATGTTCTTTTGAAAATTAATGCAAAGCTTGGTGGGATGAATTCCTTTCTGTCAATAGAGGACTTGCGCTCCATACCTCTAGTTTCTAATAAACCCACCTGGATTCTTGGCATGGATGTTTCACATGGATCTCCTGGTAGATCAGATGTACCATCTATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCTCGTTATAGAGCTGAAGTTCGTACTCAGTCACCCAAAGTTGAGATGATTGCATCTCTATTTAAGCCTGTTTCTGATACCGAGGATGAGGGTATCATCAGGGAGCTGCTTATGGACTTTCACATAACTTCAGGGAAAAGGAAGCCTGAGCAAATTATAATTTTCAGGGATGGAGTGAGCGAATCACAGTTTAACCAAGTCCTGAACATTGAATTGGATGAAATCATTAAGACATGCAAACATCTTGATGAGAAGTGGAATCCTAAGTTCACTGTGATTGTTGCACAGAAGAAGCATCATACTAGGTTCTTCCAGACCAACGCTCCAGAAAACATTCCACCTGGAACTGTCATTGACAACAATGTATGTCATCCCAAAAACAATGACTTCTACATGTGCGCTCATGCTGGGATGATTGGAACAACTCGACCTACTCATTACCATGTTTTACATGATGAAATCGGGTTCTTAACAGATGATTTGCAAGAACTAGTGCATTCTCTATCTTATGTGTATCAGAGGAGTACAACTGCCGTATCAGTAGTTGCCCCCGTTTGCTATGCTCACTTGGCAGCTGCCCAGATGGCCCAATTTATGAAGTTTGATGAAATGTCTGATACTTCTTCCAGCCATGGTGGACTCACATCTGTTGGTGTACCTCAAGTTCCTCAATTACCCCGCCTTCACAAAGATGTCACCAATTCCATGTTCTTTTGTTAA 1419 0.4235 MLRSSGINIEPNFIQVDGRVLQAPRLVVGQGENFFPRNGRWNFNNKKLVEPFKLERWAIVNFSARCDIRHLCNTIKNCAAMKGMDLAPPFKIFEEDGCFRREPAHVRVDKMYAMLKPKLPGVPQLLLCILPERKNSDIYGPWKRRSLVDEGIATQCIAPTKINDQYITNVLLKINAKLGGMNSFLSIEDLRSIPLVSNKPTWILGMDVSHGSPGRSDVPSIAAVVSSRCWPQISRYRAEVRTQSPKVEMIASLFKPVSDTEDEGIIRELLMDFHITSGKRKPEQIIIFRDGVSESQFNQVLNIELDEIIKTCKHLDEKWNPKFTVIVAQKKHHTRFFQTNAPENIPPGTVIDNNVCHPKNNDFYMCAHAGMIGTTRPTHYHVLHDEIGFLTDDLQELVHSLSYVYQRSTTAVSVVAPVCYAHLAAAQMAQFMKFDEMSDTSSSHGGLTSVGVPQVPQLPRLHKDVTNSMFFC. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07727 472 ProSiteProfiles Piwi domain profile. 125 433 IPR003165 GO:0003676
Seca3g07727 472 CDD Piwi_ago-like 6 427 IPR045246 -
Seca3g07727 472 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 435 - -
Seca3g07727 472 Gene3D - 20 186 - -
Seca3g07727 472 SMART Piwi_a_2 125 433 IPR003165 GO:0003676
Seca3g07727 472 Pfam Piwi domain 126 433 IPR003165 GO:0003676
Seca3g07727 472 Gene3D - 192 472 IPR036397 GO:0003676
Seca3g07727 472 FunFam Protein argonaute 3 193 472 - -
Seca3g07727 472 SUPERFAMILY Ribonuclease H-like 109 431 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07727 Seca-Chr3 191788663 191796184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07727 6 472 Eukaryotic Initiation Factors Gene Family AT5G43810 40.486 4.83e-105 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07727 K11593 - pop:7486850 751.51