Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07726 ATGAAAATAACATCTGATACAACACGTTTACCTGTGGCTAGGAGAGGTATTGGATCCGAAGGAGAGCCAATAGCACTCTTAACTAACCATTTTAGAGTTTCTGTGAGCAAGAATGATGGCTGCTTCTATCATTACAATGTTGCTATGTGGTATGAAGATGGCCACCCAGTTGAAGGGAAGGGTGTTGGGAGAAAGGTCATTGATAAAGTTTGTGAAACATATGATGATGTCTTGAAAAGCAAGAATTTTGCATATGACGGTGAGAAAAGCTTATTCACTGTTGGTTCTCTGCCAAGTAATAAGCATGAATTAACTGTTGTGTTAACTGGAGTTTCATCAAAGAGTGCTGATAGCCCAACTGAAGGAGACTCAAAGAGAATGAGGCGTCAATCTCAATCTAAAATTGTGAAAGTAGAGATCAGTTATGCAGCCAAAATCCCATTGCAAGCAATTGCAGATGCATTGCGTGGTCAGGATTCTATGCAATCCCAAGAAGCACTGAGGGTTCTGGACATTATCCTGAGGCAGCATGCAGCAGAACAGGGATGTCTCCTAGTTCGCCAATCCTTCTTTCATGACAATCCAAAGAATTACACTGATATAGGAGGTGGTGTAGGAGGTGTTAGTGGTTTCTACTCAAGCTTCCGAGCCACACAAAAGGGTTTATCTCTGAATGTTGATGTGTCAACCACATTGCTTGTAAGGCCTGGTCCTGTAGTGGACTTCCTTGTCCTCAATCAGGAAGTTCAACACCCAAACTTCATTGATTGGGCCAAGGCAAAAAGAATGCTTAAAAACCTCAGAATCAAGGCTAATAATATTGAATTCAAAATCACTGGACTGAGTGAGAAACCCTGTCGGTCACAGACATACTTTGTGTGTGACAGATTTTTATTAAGACATGGAAAGGATGAAAATGGTGAAGTTCAGTCAAGTGAAATCACAGTTTATGACTACTTCAAACACCACAAAAAGATTGAACTGCGCTATTCTGCTGATTTGCCATGCATCAATGTTGGCAGATCAAAGAGGCCAATTTATTTTCCTGTGGAGCTATGCAATTTGGTCTCCTTGCAGCGGTACACCAAGGCACTAACAAATTTGCAAAGGTCACAACTGGTGCAGCAATCAAGGCAAAATCCCCGTGAAAAGCAAGTAGCTTTGCAAGATTCCTTAAGAAACAGCAAATATGATGATGAGCCTATGCTTCGCTCTTTTGGGATTACCATTGACCCTAACTTTACCCCAGTTAATGGTCGTACTCTGAAACCCCCAAATCTGCTCTTTGGAGGCGATGAGAATTTCACTCCCACTAAAGGGCGCTGGAATTTCAACAAAAAGCGAATAGTTGATCCTGTGATTATTGAGCAATGGGCCATTGTAAACTTCTCGGCTCGATGTAATATAGATCACCTGTGCAATACCCTTAGGACTTGTTCTCAAATGAAAGGGGTCATAAAAAGACCTCCACTCTCAGTATTTCATGAAGAAAATCGCTTCAGGCGTGAGCCAGCACATGTCAGGGTTGACAAAATGTATGAAATGTTAAAGACCAAGCTGGCTAAGGAGGCTCCCATTCAGCTTCTATTGTGTATTCTTCCAGAGAGAAAGAATTCTGAGATTTATGGTCCTTGGAAAAGAAGAAGTCTTGCTGATGCAGGGATTGCAACACAATGTATTGCACCAACAAAAATAAATGATCAGTACATTACCAATGTTCTGTTGAAAATTAATGCAAAGCTTGGTGGGATGAACTCTTATCTGTTATCGGAGAGAGAGCGTGAAATGCCTCTTGTTTCTAATGTACCTACCTTGATTATTGGTATGGATGTTTCACATGGATCTCCTGGTAGATCAGATGTGCCATCTTTTGCTGCGGTTGCAAGCTCAAGATGTTGGCCTCAAATTTCTCGTTATAGAGCTGCAGTTCGCACTCAATCATCCAAAGTTCAGATGATTGAATCTCTATTCCAGCCTGTTTCTGAAACTGAAGATAAGGGTATCATGAGGTGTGTATTCTCTAATGAGGAGCTGCTATTGGACTTTTATGGGAGTTCAAGACAAAGAAAGCCTCAACACATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAAGTCCTGAACACTGAACTTAATGAAATCATTATGGCATGCAGACACCTTGATGATCAGTGGAATCCAAAGTTCACTTTGATTGTTGCGCAGAAGAATCATCATACTAGGTTCTTCAAGGTCGACTCTGCAGATAATATTCCACCTGGAACTGTTATTGACAGTAATGTTTGTCATCCCAAAAACAATGACTTCTACATGTGTGCTCATGCTGGAATGATTGGAACAACTCGACCTACTCATTATCATGTTTTACATGATGAGATTGGATTCTCGGCAGATGATTTGCAAGACCTTGTGCATTCTCTATCTTATGTGTACCAGAGGAGCACAACTGCCATATCAATAGTTGCCCCCATTTGCTATGCCCAATTGGCAGCTACCCAGATGGCACAATTTATCAAGTTTGATGAATTTTCAGAGACTTCTTCTAGCCATGGTGGACTCACATCTTCTGGTGTTGCTCAAGTGCCTGAATTACCCCGTCTTCATGAAAATGTCGTTAACTCCATGTTCTTCTGTTAA 2646 0.4119 MKITSDTTRLPVARRGIGSEGEPIALLTNHFRVSVSKNDGCFYHYNVAMWYEDGHPVEGKGVGRKVIDKVCETYDDVLKSKNFAYDGEKSLFTVGSLPSNKHELTVVLTGVSSKSADSPTEGDSKRMRRQSQSKIVKVEISYAAKIPLQAIADALRGQDSMQSQEALRVLDIILRQHAAEQGCLLVRQSFFHDNPKNYTDIGGGVGGVSGFYSSFRATQKGLSLNVDVSTTLLVRPGPVVDFLVLNQEVQHPNFIDWAKAKRMLKNLRIKANNIEFKITGLSEKPCRSQTYFVCDRFLLRHGKDENGEVQSSEITVYDYFKHHKKIELRYSADLPCINVGRSKRPIYFPVELCNLVSLQRYTKALTNLQRSQLVQQSRQNPREKQVALQDSLRNSKYDDEPMLRSFGITIDPNFTPVNGRTLKPPNLLFGGDENFTPTKGRWNFNKKRIVDPVIIEQWAIVNFSARCNIDHLCNTLRTCSQMKGVIKRPPLSVFHEENRFRREPAHVRVDKMYEMLKTKLAKEAPIQLLLCILPERKNSEIYGPWKRRSLADAGIATQCIAPTKINDQYITNVLLKINAKLGGMNSYLLSEREREMPLVSNVPTLIIGMDVSHGSPGRSDVPSFAAVASSRCWPQISRYRAAVRTQSSKVQMIESLFQPVSETEDKGIMRCVFSNEELLLDFYGSSRQRKPQHIIIFRDGVSESQFNQVLNTELNEIIMACRHLDDQWNPKFTLIVAQKNHHTRFFKVDSADNIPPGTVIDSNVCHPKNNDFYMCAHAGMIGTTRPTHYHVLHDEIGFSADDLQDLVHSLSYVYQRSTTAISIVAPICYAQLAATQMAQFIKFDEFSETSSSHGGLTSSGVAQVPELPRLHENVVNSMFFC. 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07726 881 Gene3D paz domain 230 361 - -
Seca3g07726 881 CDD Piwi_ago-like 401 836 IPR045246 -
Seca3g07726 881 Gene3D - 596 881 IPR036397 GO:0003676
Seca3g07726 881 Pfam N-terminal domain of argonaute 23 174 IPR032474 -
Seca3g07726 881 Pfam Argonaute linker 1 domain 186 232 IPR014811 -
Seca3g07726 881 Pfam PAZ domain 241 373 IPR003100 GO:0005515
Seca3g07726 881 Pfam Argonaute linker 2 domain 390 428 IPR032472 -
Seca3g07726 881 Gene3D - 421 589 - -
Seca3g07726 881 Pfam Piwi domain 529 842 IPR003165 GO:0003676
Seca3g07726 881 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 18 844 - -
Seca3g07726 881 SUPERFAMILY Ribonuclease H-like 511 840 IPR012337 -
Seca3g07726 881 SMART DUF1785_2 184 236 IPR014811 -
Seca3g07726 881 ProSiteProfiles Piwi domain profile. 528 842 IPR003165 GO:0003676
Seca3g07726 881 ProSiteProfiles PAZ domain profile. 276 357 IPR003100 GO:0005515
Seca3g07726 881 SMART Piwi_a_2 528 842 IPR003165 GO:0003676
Seca3g07726 881 CDD PAZ_argonaute_like 236 356 - -
Seca3g07726 881 FunFam Protein argonaute 3 596 881 - -
Seca3g07726 881 SUPERFAMILY PAZ domain 231 397 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07726 Seca-Chr3 191740987 191753337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07726 4 881 Eukaryotic Initiation Factors Gene Family AT1G48410 34.453 9.20e-154 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07726 K11593 - mof:131166568 1170.61