Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07721 ATGCGGCAGTTTGTATGCAACAGAGAAGGACTGAGGAACAAAAGGCATTTGATGAGGTTAGATCGAAAAAGGGATCATAGAGCAATCACTCGCACTAATTGTGAAGCTAAATTACGAATACGCTTCAATCGAAAGAAAACAAATTGGAGAGTGGTGTCGTTTGAGGAGTCTCATAACCATGAGCTAACCCCACCTAGGTTTGTGCATTTTAAAACGGCAATGTATTCAAATTTTACAAAGGAAGAATTTGAAGAGTTTTGGAAGAAGATAGTTGATAAACATGGACTTGTGGGGAACAAATGGGTTTCCAAGACATATGAGAACAGGTCATTATGGGCAACAACATATCTTCGTGACAAATTCTTTGGTCGGATAAGGACCACCTCACAATGTGAAGCAATCAATGCAATTGTGAAGACATATGTTAAGAAAAACAGTTCTATTATTGAATTCATGCATAAATTTGAGCAAGCATTGAGGGAGTACAGGAACAATGAAATGAGTGCTGATTTTAAGTCCTTATTTTCAGAACCAGTCTTGACTACTTGTCTGCACAAATTTGAGAAAGAAGCTGCAAAAATTTATACACTAGAGATATTTAAAGAAGTTCGGCAGCAAATAGATAAGGCTGGAGCATTAATTATTATTGATCGAGCAGTAAACAGGCAGAAGTTGAGTTTCACACTAAATAGGTATTGTAACCCTGGTCGTGGACGTCATGTTTTGTATGATACTGTTGACTGTTCTTTCATTTGTGATTGTCGTTTGTTTGAAAGTCGTGGCATTCCATGCTCTCATATTTTTTGTGCAATGAAAAATGAGCATGTAGACTTTATTCCTAGCAGTTTGATCTTGAAACGTTGGACAAAGAATGCTAAAAGTGAACTTATTTCCTCTTATCGGGTTGATGAAGTTCATTCTGATGTGTTGTCTGCTGCCCGGATATCAGCCTTATCTGCCTATTGTTACAACTTTGTTAGGGTTTCTTATGAAAAGACAGGGTGTTTTGGTGAGATAGTAGATGACATTTTTAATCTTCAGTTGAAGTATGAGAAGAAAGGGGATCCAAGTAGCACATCCTCATCAGCAAGGAAAATTGGTGATCCCACTGTGGTTAAGACTAAAGGTGCTCCTAAAAAGAGTAAGTTTAGCAAGAAAAGAAAGAGACATTGTTCAAATTGCTCAGGCACAGGACACACAATTAGGACATGTCCTAAAGTTGGTGGTATAGATGTTAAGGTTGATACTGATGATGAGACTTCACCTTCAGAGAGGAGTGACAATAACAAATCAAATGACAGTGACAAAAATGAAATGGAATTTGATGTATCTAACACTCAAGTCCCTGTACATTCACAAAATTCCAGTGGGAGAAACATTAAAAAAGGGAAGGAGAAGGAGAAGGTTGATCCTGTTAGCACTAGTAAGGTGAAAAAGGTGAAGGGGAAAAAGGAAAAAGACTCAAGTCAAAAACAGGCGAATGAAGTTAAAATTGAATCAATGAGTTATTATAGTGGAGGAGGAATGCATAATATTCATCAAGGTGGTTGTTCTACTGGAGTAATGCCTAATTTTCCGCAAATGAGATTTCCCTCATATGGTTATGGCTCAATGAATCATGGGGTTTCCATGATGCCTCATTATGATGGAGGTCACTGTTACCCTCAAACTGGTGGAGCTCCATTATACCCTCAACATCATCAGTATTTTAGTCAAATCCCAAGTGTACATAATGGGTCATCATGGCATGATTTGCTTCAACATGTATCCCAAAATAGGGGTGCCTGCAGTAAGTGTTTATGA 1803 0.3794 MRQFVCNREGLRNKRHLMRLDRKRDHRAITRTNCEAKLRIRFNRKKTNWRVVSFEESHNHELTPPRFVHFKTAMYSNFTKEEFEEFWKKIVDKHGLVGNKWVSKTYENRSLWATTYLRDKFFGRIRTTSQCEAINAIVKTYVKKNSSIIEFMHKFEQALREYRNNEMSADFKSLFSEPVLTTCLHKFEKEAAKIYTLEIFKEVRQQIDKAGALIIIDRAVNRQKLSFTLNRYCNPGRGRHVLYDTVDCSFICDCRLFESRGIPCSHIFCAMKNEHVDFIPSSLILKRWTKNAKSELISSYRVDEVHSDVLSAARISALSAYCYNFVRVSYEKTGCFGEIVDDIFNLQLKYEKKGDPSSTSSSARKIGDPTVVKTKGAPKKSKFSKKRKRHCSNCSGTGHTIRTCPKVGGIDVKVDTDDETSPSERSDNNKSNDSDKNEMEFDVSNTQVPVHSQNSSGRNIKKGKEKEKVDPVSTSKVKKVKGKKEKDSSQKQANEVKIESMSYYSGGGMHNIHQGGCSTGVMPNFPQMRFPSYGYGSMNHGVSMMPHYDGGHCYPQTGGAPLYPQHHQYFSQIPSVHNGSSWHDLLQHVSQNRGACSKCL. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07721 600 ProSiteProfiles Zinc finger SWIM-type profile. 244 275 IPR007527 GO:0008270
Seca3g07721 600 SMART 26again6 250 277 IPR006564 GO:0008270
Seca3g07721 600 MobiDBLite consensus disorder prediction 441 457 - -
Seca3g07721 600 MobiDBLite consensus disorder prediction 353 367 - -
Seca3g07721 600 MobiDBLite consensus disorder prediction 353 395 - -
Seca3g07721 600 SUPERFAMILY Retrovirus zinc finger-like domains 380 409 IPR036875 GO:0003676|GO:0008270
Seca3g07721 600 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 69 IPR031052 GO:0006355
Seca3g07721 600 MobiDBLite consensus disorder prediction 411 440 - -
Seca3g07721 600 MobiDBLite consensus disorder prediction 410 494 - -
Seca3g07721 600 MobiDBLite consensus disorder prediction 458 493 - -
Seca3g07721 600 MobiDBLite consensus disorder prediction 378 393 - -
Seca3g07721 600 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07721 Seca-Chr3 191649830 191653949 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g07721 FAR1 9.3e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07721 - - ccaj:109792835 427.943