Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07688 ATGGCCATTCTTCCTACCATCTTTATTATCTCCAAACTACTAATGTTCTTCTCTCAAATTTCCACCGCAATCGATACTATTACCCAAAATGAGCCCCTTCAAGACGGCAACACCTTAGTTTCTAGTGATGGAACCTTTGAGTTGGGCTTTTTCAGCCCAGGTAGTTCAACAAATCGCTATGTGGGAATCTGGTACAAAAACATCTCAGTTACAACTATTGTTTGGGTTGCCAACCGTGACAACCCAATCAAAGACAACTCCAGCACATTGACCATAAACAAAGAGGGAAACCTCGTCCTTCTTAGCAACAACAATCAATCCCTTCTTTGGTCAATAACAAACATCACAACCCAACCTTTGAGTCCCATGGCTCAGCTCTTAGACACAGGAAACTTGGTCCTCAAAAACAATGAAGAAGAAAATTTCCTTTGGCAAAGCTTTGATTTTCCTTGTGACACACTCTTGCCAGGAATGAAACTTGGATGGGACCTTAAGACTGGTCTTAATAGACGTCTAACTGCTTGGAAGAATTGGGATGATCCATCTTCAGGAAACTTAACTTGGAGTATGGTTCTTGGAAGCAACCCAGAGATAGTACTTTGGAAAGGGCCTGTTAAGTACCATAGAAGTGGGCCTTGGAATGGTGTTGGGTTTAGTGGACAACCTGTGTTGAGGTTTACTCCAATTGTTGACACAAAATTTGTCAATAACTCAAATGAAGTATATTACTCATATACCCTTAGGAACAAGTCTGTGATTTCAATTACTTATTTGAACCAAACTCTTTCTAAACGCCAACGTATTACATGGATTCCAGAGAACAAAACATGGAGGGTCTATGAGTCTGTGCCGAGAGATGATTGTGATGCTTATAATCCTTGTGGGCCTTATGGGAATTGCATGCCTAATCAGTCCCCAATTTGCCAGTGTTTAGAAGGATTCAAACCGAAATCAACACAGAATTGGAACGCGTGGGAGTGGACTGAAGGGTGTGCGCGGAGTGAAGAATGGAGGTGTAGGGTGGAAAACCAAGATGGGTTTCGGAGTTTTGATGGGCTGAAATTGCCTGATACTACGAATTCTTGGGTTAATGTGAATATGACACTTGAGGATTGTAAGGCTAAATGCTTGGAGAATTGTTCTTGCACAGCTTATTCGAATTTGGATGTGAGTGGAGCTGGTAGTGGATGTTCCATTTGGTTTGGTGATCTTATTGGTTTGAAGCAAGTTTCATCAGTTCAACAATATCTATATATTCGAATGGTTGCTTCTTCAAACTCAACCGTAGGTGGGGATAAGAAAAAGACGGCTTTAGTGATTACAATCCCAATTCTGTTGGTCCTTGCTTTGCTACTCGCAATCTCCTACATTTACAAAAGAAAAAGAAAGCATCGAGAGAACATCATCATAGCCGAAAAGAAAGATGAAGATGGAGAACAAGATTTCGAGCTTCCTTTCTTTGATCTTTCTACAATAGCTCATGCCACCAATAACTTCTCAAATGGCAACAAACTCGGAGAAGGAGGTTTTGGACCAGTATATAAGGGTACATTGCCAGATGGACGAAAGATTGCTGTCAAAAGGCTTTCAAGGAGTTCTAAACAAGGATCAAAAGAATTTAAAAATGAAGTTATATTATGTGCAAAACTTCAACATCGAAATCTTGTTAAGGTTATTGGTTGTTGCATTCAAGGAGAGGAGAGAATGCTACTCTATGAATACATGCCTAATAAAAGCTTAGATTCATTTCTTTTTGATCCAGCTCAAAGTAGACTTCTTGACTGGCCCAAGCGCTTTCACATCATGTGTGCAATTTCTCGTGGACTTCTTTATCTTCATCAAGATTCTAGATTAAGGATCATCCATAGAGATCTAAAAACAAGTAACATTTTATTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGCTTGGCAAAAATTTGTGGAGATGATCAAATTGAAGGGAATACAAACAGAGTTGTTGGGACACATGGTTATATGGCGCCCGAATATGCTATTGATGGGCTATTCTCCATAAAATCCGATGTATTTAGCTTTGGTGTATTATTGCTAGAGATTATAAGTGGAAAGAAAAATAGAGGACTTACTTATCCAAGAAACAATCATAACCTTATTGGGCAAGCATGGAGGTTGTGGAAAGAGGGAAGTCAAAAGGAATTCATTGATGATTGTTTAGGAGACTCGTGTATTTTATCTGAAGCCTTACGATGCATACAAATTGCTCTTTTGTGTTTACAATATCATCCAAATGATAGACCAAATATGGCATCTGTGCTTATGATGTTGACAAATGAAACTATTTTAGCTGAACCAAAGGAGCCTCATTTCTTAATAGAAGGGATCTCTATTGAAGGAGAATCTTCTACCACCGAAAAGTTAATGTCTTCATCCATCAATGAAGTAACCATTTCATTATTAGATGTTAGATAA 2454 0.3871 MAILPTIFIISKLLMFFSQISTAIDTITQNEPLQDGNTLVSSDGTFELGFFSPGSSTNRYVGIWYKNISVTTIVWVANRDNPIKDNSSTLTINKEGNLVLLSNNNQSLLWSITNITTQPLSPMAQLLDTGNLVLKNNEEENFLWQSFDFPCDTLLPGMKLGWDLKTGLNRRLTAWKNWDDPSSGNLTWSMVLGSNPEIVLWKGPVKYHRSGPWNGVGFSGQPVLRFTPIVDTKFVNNSNEVYYSYTLRNKSVISITYLNQTLSKRQRITWIPENKTWRVYESVPRDDCDAYNPCGPYGNCMPNQSPICQCLEGFKPKSTQNWNAWEWTEGCARSEEWRCRVENQDGFRSFDGLKLPDTTNSWVNVNMTLEDCKAKCLENCSCTAYSNLDVSGAGSGCSIWFGDLIGLKQVSSVQQYLYIRMVASSNSTVGGDKKKTALVITIPILLVLALLLAISYIYKRKRKHRENIIIAEKKDEDGEQDFELPFFDLSTIAHATNNFSNGNKLGEGGFGPVYKGTLPDGRKIAVKRLSRSSKQGSKEFKNEVILCAKLQHRNLVKVIGCCIQGEERMLLYEYMPNKSLDSFLFDPAQSRLLDWPKRFHIMCAISRGLLYLHQDSRLRIIHRDLKTSNILLDNDMNPKISDFGLAKICGDDQIEGNTNRVVGTHGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRGLTYPRNNHNLIGQAWRLWKEGSQKEFIDDCLGDSCILSEALRCIQIALLCLQYHPNDRPNMASVLMMLTNETILAEPKEPHFLIEGISIEGESSTTEKLMSSSINEVTISLLDVR. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07688 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Seca3g07688 817 Pfam Protein tyrosine and serine/threonine kinase 501 768 IPR001245 GO:0004672|GO:0006468
Seca3g07688 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Seca3g07688 817 SMART ntp_6 342 421 IPR003609 -
Seca3g07688 817 Gene3D Hepatocyte Growth Factor 338 420 - -
Seca3g07688 817 SMART serkin_6 499 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07688 817 SMART blect_4 30 150 IPR001480 -
Seca3g07688 817 CDD STKc_IRAK 505 772 - -
Seca3g07688 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 778 - -
Seca3g07688 817 Gene3D - 18 147 IPR036426 -
Seca3g07688 817 Gene3D Transferase(Phosphotransferase) domain 1 575 781 - -
Seca3g07688 817 CDD PAN_AP_plant 342 420 - -
Seca3g07688 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Seca3g07688 817 CDD B_lectin 30 150 IPR001480 -
Seca3g07688 817 ProSiteProfiles Protein kinase domain profile. 499 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07688 817 Pfam D-mannose binding lectin 72 176 IPR001480 -
Seca3g07688 817 Pfam PAN-like domain 339 405 IPR003609 -
Seca3g07688 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Seca3g07688 817 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Seca3g07688 817 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Seca3g07688 817 CDD EGF_CA 286 318 - -
Seca3g07688 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 761 - -
Seca3g07688 817 SUPERFAMILY Protein kinase-like (PK-like) 482 770 IPR011009 -
Seca3g07688 817 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Seca3g07688 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 462 574 - -
Seca3g07688 817 Gene3D Phosphorylase Kinase; domain 1 458 574 - -
Seca3g07688 817 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07688 Seca-Chr3 190113410 190118028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07688 437 787 Receptor kinase-like Gene Family AT4G23230 55.114 1.02e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07688 PK_Tyr_Ser-Thr 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07688 - - tpra:123915417 1160.59