Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07683 ATGGGTTCGCTCGAGGCACCAACCGGTACGGAAAACGGTTCCGCTGCCCCCACCGGCAACGGAAAAAGTCTGTCCGCCGAAGGTGGAACACGCGCCCCGCCGGCGGAGGCTGCGCCTGAGTCAGACGCGTCGAAGCGGCGGAGATCTTCGGTGCTCCCCCTGGAGGTTGGGACGCGCGTGATGTGCCGTTGGAGGGACGGGAAGTATCACCCTGTCAAAGTCATCGAACGCCGCAGGGTCCCCGGCTTTGGCCCCAACGATTACGAGTATTACGTCCATTACACTGAGTTCAATAGGAGGCTTGATGAGTGGGTGAAGCTTGACCAGCTTGATCTTGATTCAGTGGAGGCAGTTGTTGATGAGAAAGTGGAGGAGAAGGCAACAGGTTTGAAGATGACACGCCACCAAAAGAGGAAGATTGATGAGACTCATGTAGAGGTAGGCCATGAGGAGCTTGATGCTGCCAGTTTAAGAGAACATGAGGAATTTACAAAAGTGAAAAATATAGCTACTATTGAACTTGGAAGATATGAGATTGAGACATGGTACTTCTCCCCATTCCCACCAGAATACAATGACTGTTTGAAGCTGTACTTTTGTGAGTTTTGCCTCAATTTCATGAAGCGCAAAGAACAGCTTCAGAGGCATATGAGAAAATGTGATCTTAAACATCCCCCTGGTGATGAGATATACAGAAGTGGTACATTGTCAATGTTTGAGGTTGATGGCAAAAAGAACAAGGTTTATGGGCAGAATCTTTGTTATTTGGCAAAGTTATTTCTTGACCACAAGACCCTCTATTATGATGTTGACCTGTTTTTGTTCTATGTTTTGTGTGAATGTGATGATCGAGGATGCCACATGGTTGGTTATTTCTCCAAGGAAAAACATTCTGAGGAATCTTACAATTTGGCATGTATCCTCACCCTTCCACCTTATCAAAGGAAAGGCTATGGCAAATTTCTAATTGCTTTCTCAGCATATGAACTTTCCAAAAAGGAGGGCAAAGTTGGCACACCTGAAAGGCCACTTTCAGACCTTGGACTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTCTTAGACATTCTGAAAAAGCATAAGGGCAACATTTCTATCAAGGAGCTGAGTGATATGACTGCCATTAAAGCTGAAGATATATTGACCACTCTTCAGAGCCTAGAATTGATTCAATACAGGAAAGGACAGCATGTTATTTGCGCAGATCCGAAGGTTCTGGATCGGCATCTCAAAGCTGCTGGCAGAGGGGGTCTTGAGGTTGATGTTAGCAAATTGATCTGGACTCCTTATAAAGAACAAAGTTGA 1326 0.46 MGSLEAPTGTENGSAAPTGNGKSLSAEGGTRAPPAEAAPESDASKRRRSSVLPLEVGTRVMCRWRDGKYHPVKVIERRRVPGFGPNDYEYYVHYTEFNRRLDEWVKLDQLDLDSVEAVVDEKVEEKATGLKMTRHQKRKIDETHVEVGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSAYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQS. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07683 441 SMART chromo_7 68 127 IPR000953 -
Seca3g07683 441 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 165 437 IPR016181 -
Seca3g07683 441 Gene3D - 165 221 - -
Seca3g07683 441 Gene3D - 42 164 - -
Seca3g07683 441 SUPERFAMILY Chromo domain-like 48 165 IPR016197 -
Seca3g07683 441 FunFam Histone acetyltransferase 44 164 - -
Seca3g07683 441 FunFam Histone acetyltransferase 344 423 - -
Seca3g07683 441 CDD CBD_MOF_like 57 126 - -
Seca3g07683 441 FunFam Histone acetyltransferase 223 352 - -
Seca3g07683 441 Pfam MYST family zinc finger domain 166 220 IPR040706 -
Seca3g07683 441 Pfam RNA binding activity-knot of a chromodomain 54 112 IPR025995 -
Seca3g07683 441 Gene3D - 344 424 IPR036388 -
Seca3g07683 441 FunFam Histone acetyltransferase 163 220 - -
Seca3g07683 441 Gene3D - 223 436 - -
Seca3g07683 441 MobiDBLite consensus disorder prediction 1 50 - -
Seca3g07683 441 PANTHER HISTONE ACETYLTRANSFERASE 58 437 - -
Seca3g07683 441 MobiDBLite consensus disorder prediction 1 25 - -
Seca3g07683 441 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 164 436 IPR002717 GO:0004402|GO:0006355|GO:0016573
Seca3g07683 441 Pfam MOZ/SAS family 225 403 IPR002717 GO:0004402|GO:0006355|GO:0016573
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07683 Seca-Chr3 189977271 189989104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07683 1 441 C2H2 Transcription Factor Family AT5G64610 85.268 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07683 K11308 - gmx:100819168 828.935