Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07674 ATGAACACAACCCTCACTCTAACATCCGTGAGCGGGAGAGGTTTCCTTCCTATCGCCAACATCAGCCGCATCATGAAAAAGGCCCTCCCTGCCAATGGAAAAATCGCTAAGGATGCCAAAGAGACCGTTCAAGAGTGTGTGTCTCCAATTTCATCATGCTCATCACTAATGAGTAAGTTTAACTTTATTTAA 192 0.4427 MNTTLTLTSVSGRGFLPIANISRIMKKALPANGKIAKDAKETVQECVSPISSCSSLMSKFNFI. 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07674 63 Gene3D Histone, subunit A 15 59 IPR009072 GO:0046982
Seca3g07674 63 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 48 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca3g07674 63 SUPERFAMILY Histone-fold 15 49 IPR009072 GO:0046982
Seca3g07674 63 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 48 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07674 Seca-Chr3 188986900 188987091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07674 15 50 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.111 2.78e-17 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07674 K08065 - csv:101212699 69.707