Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07666 ATGCACCGGTTTGCCAACTCTGTCATAGAAGGGGAGGTGTACAATGTTACTCAGTTCACTGTTGCTCGGAATAGTGGTAAATTCAGAGCAACTCACCATGACCACAAGCTAACCTTTAATGCCAACACAAGGATTGTCCCATGTCCAACGGTTGCTATTCCGGCCACCGACTTCATGGGTATTGTTACTGGTACATCAGAAGAGCTGACTCTAAGCAAGGAAGGGAGGCAGACACGCCTGATGCTCATCAATATGGTCGACGGAATGGGAAAGATTAGATGTGCTATTTTCGGGCAACTCATTGACACTGTGAAAGGCTTCCTTACTCTTTCCCGCTGCGGGCTGCCTGTGCTAATCATCCATCTTGCTCGTGTGAATCTTTACAGGGGGGAGGTGGGCATTCAAAACCTTTTAAATGCCTCAAAGTTGTTCTGGAACCCTGAAATACCTGAGGCAATAGAGTTCAAGAATAGCCTCGCTATCCATGAGATTGAAACCGATGTGGAGATATCCCTCATTTCAGACAATAGGCACCCCGTCTCTGTGCGCAAGAAATTCCTCACAAAGTTTCCCAGGAAACGTGTGGGGGACCTGAACCACATGCTAGAGGATGAAACTTATATAGTTCTTGGTACAATAACAGAGGTGTTCCAAGAATACGACTGGTGGTACATAGCATGCTCCTGCATAAGGGCTGTTGACTTCAGCCAGGGTTTTCCCTATTGCGACGATTGCAAACGTGAGGTGTTCGACATGTCACCTAGGTACAAGGTAAAGATCCTTGTGACTGATCAGTCAGATTCCACTGAACTAATCATGTTTGACTCAACATGTTATTCTCTACTCAACATACCTTGCAAGGGGCTACTTTCGGACCATAAGGTGTTATTCACTGCTTATCGGATGACAAGTTTTATTCACTCTTTTCTACATTTATCCATTACATTGTTAAAATCAATGTCTTCCGTGTTGCATGCTATGAAGACAGATGGTTATCCACCTAAAATCTTAGATTTCATTGGCCAAGAAATGATTTTCAGTCTTGAACTGAATGCAGAGAAATCTTCCTCATACGATGGAGAGGCCATCAAAGTGCAGAAAATATGTTTAGATGCATGCATTCTCGATGAGTATAAGGAACTCATTGATGATGAGACTCCTTTGAAGCTAAAATTTGCTCCTGCCTTCTCCAAATTTGAGGATAGCGGCGGAAAGAGCTGTGTTATTGATCTCACCCCAAACAGCATCACTGTTGGTGGTCAGTTGACTTGA 1272 0.4395 MHRFANSVIEGEVYNVTQFTVARNSGKFRATHHDHKLTFNANTRIVPCPTVAIPATDFMGIVTGTSEELTLSKEGRQTRLMLINMVDGMGKIRCAIFGQLIDTVKGFLTLSRCGLPVLIIHLARVNLYRGEVGIQNLLNASKLFWNPEIPEAIEFKNSLAIHEIETDVEISLISDNRHPVSVRKKFLTKFPRKRVGDLNHMLEDETYIVLGTITEVFQEYDWWYIACSCIRAVDFSQGFPYCDDCKREVFDMSPRYKVKILVTDQSDSTELIMFDSTCYSLLNIPCKGLLSDHKVLFTAYRMTSFIHSFLHLSITLLKSMSSVLHAMKTDGYPPKILDFIGQEMIFSLELNAEKSSSYDGEAIKVQKICLDACILDEYKELIDDETPLKLKFAPAFSKFEDSGGKSCVIDLTPNSITVGGQLT. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07666 423 Gene3D - 27 167 IPR012340 -
Seca3g07666 423 SUPERFAMILY Nucleic acid-binding proteins 56 162 IPR012340 -
Seca3g07666 423 SUPERFAMILY Nucleic acid-binding proteins 203 291 IPR012340 -
Seca3g07666 423 Gene3D - 189 372 IPR012340 -
Seca3g07666 423 Pfam Replication factor-A C terminal domain 209 289 IPR013955 -
Seca3g07666 423 Pfam Domain of unknown function DUF223 3 52 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07666 Seca-Chr3 188688805 188691446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07666 3 294 Core DNA Replication Machinery Family AT4G19130 21.148 7.01e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07666 - - lja:Lj6g3v0884310.1 231.491