Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07660 ATGGATAGGATTCAAGAGGCAAATGAAAATAAACCTCAGCGTTCCTCTTCTTCAATGGTAGCTATAGCAATCAAGGGTAACAAAAAAAGCAAATATGTGGTACAGTGGGCACTTAATAAGTTTGTTCCAGAGGGAATGATTATCTTCAAGCTGATACATGTCCAAGCTGGTATAAAAGGAGTTCCAACACCAATGGGAAATGTGATCCCCCTCTCACAAGTGCGTAATGATGTAGCAACTGCTTACAGAAAGGAAGTGGAGTGTCAAACAAATCAAATGCTTCTACCTTTAAAGAAAATGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGTAGTGATTGAATCAGATGACGTGGCAACTGCAGTAGCAGAGGAAGTAGCTAAGGGTGCTATAACCAAACTTGTGGTTGGAGCTTCATCTAGTGGCATATTTAAAAGTAAACATAAGGGTATGTCTGCAAAAATCTCAGTATGCACTCCAAGATTTTGTACAGTCTATGCTATTTCAAAAGGAAAATTGTCCATACGGCCATCAGACCTGCAGATTGATCATGGAAGCATTATAGATGACATTAGTGAAACCAGTTTTTCCTCCAGCAGCTCATCAAACTACACTTCCACCACTCAGACAGAGTCTGGCTCAGTTACATCATATGCTGCTTTACATTCCTCTTCCCTAGCAACGCAGCGATTTCAAGCTCTCTCAAGTATAAATCAGACCCTTCTAAGCACAACTCCTAGTTTAAATGAACCTATTCATTCTAGAGGCCAGTCTCTAGATCTTGGGAAAGAAAATGCTGCCACAAGTTCTGCTAGAAACTCTGATATTGATCATACTCTGAGTCGGGCCTCTAGTTGCAGAAGCGTTATGTCAGATACTGAATCTTGGATTTATGATCAAATTTCTGTCAAGGATGTGCCACTAGCAACGAAACTTCTGTCACCAAATAGGCAGGATCAGGAAAATTTTAGCCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGAATGCATGCAATAGCTCAAAGTGAGAACATTGATGCATCACGGAAGCTGAATGAACTGAGCAAGAGAAGATCAGAAGAATCCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGATGGCCAAAGAATTAGCAAGACAAGAAAGAGAGAAATATGAAGCTGCAGCAAGAGAAGCCTCATATTTGAAAGAATGTGCTGAAAGAGAAGCAGCAGAAAGAAAAGAAACAGAATTGAAAGCTATTCGTGCTGCCAAGGAGAAAGAAAAGCTGGAGGATGCTCTAAGTGGTTCAATGCCCCAGTACCGGAAGTTTACATGGGATGAAATAGTTTCAGCTACTTCATCGTTCTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAATTGTGTATAAGTGCATTTTACATCATACAACTGTTGCTGTGAAAGTTCTCCACTCTAATGGAAACCGCAAAACCAAGCAATTCCAGCAGGAGTTAGAGATATTAAGCAGAATTCGTCATCCAAACTTGCTGCTTCTTCTTGGTGCATGTCCTGAACAAGGATGTCTTGTATATGAATATATGGAGAATGGTAACTTGGACGATAGACTACTCCGGAAAAACAATACTGCCCCAATCCCATGGTTTGAGAGGTTTCGAATAGCTTGGGAAGTTGCATCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCAGAACCTATCATCCATCGTGACTTGAAACCAGCAAACATCTTGCTTGGTCGTAACCTTGTCAGCAAGATTGGTGATATAGGCCTTTCTACAATGCTCCATTCAGATAATTTATCTACCATGTATAAGGACACTGAGCCTGTTGGGACACTCTGCTACATAGATCCCGAGTATCAAAGGACTGGGTTAATATCTCCTAAATCTGATGTTTATGCTTTTGGAATGGTGATCTTACAGTTATTGACAGCAAAACCAGCAATAGCACTTACTCATGTGGTTGAAACAGCGATTGATGGCGGGAATTTAACAGATATATTGGATCCAGAGGCAGGACCATGGCCATTTCAAGAAACATTAGACTTAGCTCGGTTAGGACTGAGCTGTGCAGAGCTTCGGCGTAGAGACCGGCCTGATTTAAAAGATCACGTTCTTCCAACACTAGAGAGATTGAAAGAAGTTGCTGATAGGGCTCAACATTCTGCTTCCATTGTTCCTATTAAATCCAGACCTCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATATACATATGATCGCAAAGCAATTGAAAAGTGGCTTCAAGAGAATGACAAATCACCAATGACAAATATGGCTTTGCCTCATAAGCATCTAATTCCTAATTACACACTTCTGTCAGCAATTATGGAGTGGAAGTCCAGTGAAATATGA 2427 0.4091 MDRIQEANENKPQRSSSSMVAIAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVQAGIKGVPTPMGNVIPLSQVRNDVATAYRKEVECQTNQMLLPLKKMCEQRKVHVDVVVIESDDVATAVAEEVAKGAITKLVVGASSSGIFKSKHKGMSAKISVCTPRFCTVYAISKGKLSIRPSDLQIDHGSIIDDISETSFSSSSSSNYTSTTQTESGSVTSYAALHSSSLATQRFQALSSINQTLLSTTPSLNEPIHSRGQSLDLGKENAATSSARNSDIDHTLSRASSCRSVMSDTESWIYDQISVKDVPLATKLLSPNRQDQENFSLELEKLRIELRHAQGMHAIAQSENIDASRKLNELSKRRSEESMKMKEIIAKEEMAKELARQEREKYEAAAREASYLKECAEREAAERKETELKAIRAAKEKEKLEDALSGSMPQYRKFTWDEIVSATSSFSEDLRIGMGAYGIVYKCILHHTTVAVKVLHSNGNRKTKQFQQELEILSRIRHPNLLLLLGACPEQGCLVYEYMENGNLDDRLLRKNNTAPIPWFERFRIAWEVASALSFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTMLHSDNLSTMYKDTEPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALTHVVETAIDGGNLTDILDPEAGPWPFQETLDLARLGLSCAELRRRDRPDLKDHVLPTLERLKEVADRAQHSASIVPIKSRPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLQENDKSPMTNMALPHKHLIPNYTLLSAIMEWKSSEI. 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07660 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Seca3g07660 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 808 IPR013083 -
Seca3g07660 808 Coils Coil 327 347 - -
Seca3g07660 808 ProSitePatterns Protein kinases ATP-binding region signature. 460 481 IPR017441 GO:0005524
Seca3g07660 808 PANTHER OS02G0152300 PROTEIN 19 802 - -
Seca3g07660 808 CDD STK_N 20 171 - -
Seca3g07660 808 Gene3D Phosphorylase Kinase; domain 1 432 526 - -
Seca3g07660 808 MobiDBLite consensus disorder prediction 261 275 - -
Seca3g07660 808 Gene3D HUPs 13 150 IPR014729 -
Seca3g07660 808 SUPERFAMILY Protein kinase-like (PK-like) 436 709 IPR011009 -
Seca3g07660 808 SUPERFAMILY RING/U-box 736 805 - -
Seca3g07660 808 ProSiteProfiles U-box domain profile. 737 808 IPR003613 GO:0004842|GO:0016567
Seca3g07660 808 Coils Coil 373 431 - -
Seca3g07660 808 Pfam Protein tyrosine and serine/threonine kinase 459 707 IPR001245 GO:0004672|GO:0006468
Seca3g07660 808 MobiDBLite consensus disorder prediction 245 275 - -
Seca3g07660 808 Gene3D Transferase(Phosphotransferase) domain 1 527 734 - -
Seca3g07660 808 ProSiteProfiles Protein kinase domain profile. 454 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07660 808 SMART serkin_6 454 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07660 808 SMART Ubox_2 741 803 IPR003613 GO:0004842|GO:0016567
Seca3g07660 808 Pfam U-box domain 739 805 IPR003613 GO:0004842|GO:0016567
Seca3g07660 808 CDD RING-Ubox_WDSUB1-like 739 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07660 Seca-Chr3 188273204 188281398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07660 17 806 U-box Gene Family AT4G25160 52.835 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca3g07660 PK_Tyr_Ser-Thr 3.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07660 - - gsj:114409387 1265.75