Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07629 ATGGAGAACAACGATGTTGTCTGCATAATATGCAATAAATCCTTTTCTAATGGAAAAGCCTTAGGAGGCCACATCAAAACTCACCTAGCCAAACTACCAATCCCTCCAAAACCTAAAACTAGCAATCAAGAAACTGAAAACTTGGCCAAGTCAACCGCCCATCCAGCTGACTGTATTTCTACATTTTCCTCATTGGTTGTCCATCCCAGAAATAACCCTATACCCAATCTTCGATGTTTGGAACTATGCAACTTCTTTACCTTGGCAAGCTTTGGCAGAAAAGGTGAGTTTGAGGCTTACCCGAAAAATCTAACTCGAAAAAGATCCAAACGCAAACGTAAAATATTTGCTATGGCTGAGACAAATGTTAAATTAAGAAAAATGAGTTTAACATCTGATACTCTTTCTGTTGAAGAAGCTGCTAGGACGCTAATAATGATTTTTAGGGATAAATGGCCGGAAAACAAAAGGTTTAAGACACAACAAGTGGCAGAGAAAACAAACGCAGAAGAGGCAAAAAGTGTTGAAAATGGAAAAGATGACTCACTCCCTCAAAGTCAATTTCAAGGCAAGTTCAAATGTGAGAGACGTAGAAACAAAAGCGATGTTGCAGATCATAAATTACATGATTACCCATAA 639 0.3818 MENNDVVCIICNKSFSNGKALGGHIKTHLAKLPIPPKPKTSNQETENLAKSTAHPADCISTFSSLVVHPRNNPIPNLRCLELCNFFTLASFGRKGEFEAYPKNLTRKRSKRKRKIFAMAETNVKLRKMSLTSDTLSVEEAARTLIMIFRDKWPENKRFKTQQVAEKTNAEEAKSVENGKDDSLPQSQFQGKFKCERRRNKSDVADHKLHDYP. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07629 212 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Seca3g07629 212 MobiDBLite consensus disorder prediction 161 178 - -
Seca3g07629 212 Pfam C2H2-type zinc finger 8 30 - -
Seca3g07629 212 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 195 IPR044303 GO:0006355
Seca3g07629 212 MobiDBLite consensus disorder prediction 161 212 - -
Seca3g07629 212 MobiDBLite consensus disorder prediction 191 212 - -
Seca3g07629 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07629 Seca-Chr3 187892212 187892850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07629 8 156 C2H2 Transcription Factor Family AT3G60580 32.099 2.66e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g07629 zf-C2H2_6 2.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07629 - - ccaj:109798515 157.918