Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07613 ATGAATAACTTTTCTCATGTTCCCCCTGGCTTTAGGTTCCATCCAACGGATGAAGAACTTGTTGATTACTATCTGAGGAAGAAAGTTACTTCAAGGAGGGTCGACCTCGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGATCTTCAAGATCTTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAGGCAACTGGGAGAGATAAAGCAATCTATTCGAAGCATGACTTGATAGGGATGAGGAAAACATTAGTGTTTTATAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATCATGCATGAGTATCGCCTTGAAACAGATGAGAGTGGCACACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAGCTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTGGACTCACTAAACCAAACTTCTCAACAACACAACTTGCCCTACCACCACTTCCCATATCCTTGCAAGAAAGAACTAGATTTACCATACCATGTGCCACGTGAGCACTTTCTCCAGCTTCCATTGGATAACCAAAAACTTCTTCAATCTGCTCCCAATAATATTACAATGGCAGCATATGGCATAGAAGAAAACCATGCAGCATCAATCTTGCAACAAGTTCAACAAACTAGTAATGTTCATCAGCAAAACCTTCATCAGGGAGCAGTGTTTGGAAACAATAATTCCAATGAACAAGTGGCTGCGGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGACCATCATGTAATAACCAAAGACAATAGCTACTCAAATGCTGCAGGTAATAACATGTTTCATGTGAAGAACAATAGCAATATTGAACAGTTCAGAGACTTGGACAAGCAAGAAATTATGCCTGAAAATGCCTCAACATCAAACTCCAGCTGTCCAATTGACATGTGGAAATAG 1077 0.4058 MNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRRVDLDVIKDVDLYKIEPWDLQDLCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDESGTPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDLDSLNQTSQQHNLPYHHFPYPCKKELDLPYHVPREHFLQLPLDNQKLLQSAPNNITMAAYGIEENHAASILQQVQQTSNVHQQNLHQGAVFGNNNSNEQVAAADWRALDKYVASQLSQEDHHVITKDNSYSNAAGNNMFHVKNNSNIEQFRDLDKQEIMPENASTSNSSCPIDMWK. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07613 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 296 - -
Seca3g07613 358 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Seca3g07613 358 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Seca3g07613 358 FunFam NAC domain-containing protein 16 160 - -
Seca3g07613 358 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Seca3g07613 358 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07613 Seca-Chr3 186593673 186598515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07613 1 358 NAC Transcription Factor Family AT1G12260 55.526 5.12e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g07613 NAM 5.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07613 - - gmx:100809321 556.984