Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07610 CTGCTCAGCACTCAGCACCAAGCCAAAAGCAGTAAACAAAAAAAAAAAAACTTCATAGATTGGTGGTGCAACTTAACTCTTATTGTTTATTCTGATCTCCTTAATTTTCCTTTACTAGAAATGGCAATCTTACGAAAGACATTCCTCACGCTCTTATTTTTATCTTCAGTTTTCTCATTGGCTTCATCAAGAAGAGAACCATCCTCCAGCAACATAGATTGGTGGTGCAACCTAACCCCACATCCTGGGCCATGCAAATACCACATAAGTCAACTGAACCAACATTTCACAATCAAACACAGAACTGAATTCAGGGGAATGCTTGTTCAATTGGCCTTAAATCAAGCACTTATCATGCAAAGGGAAGCACATGATTCTGAACAGAACATGGTGACAGAGAAGCATAGAACTGTACATGGTGATTGTTTGAAGCTGTATGAAAACACCATCTTTCATCTCAATCGTACCCTTGAAAGCCTTCACGTGAAGAGGGGCTTTTCACCGGTTGATGCACAAACTTGGCTCAGCACTGCTCTCACAAACATTGAAACCTGTAGAACAGAAGCTATAGAACTCAATGCTCAAGATTTCAAGGTGCCAACAGGGAGGAACAATGTCACTGAAATGATAAGGAACAGCTTAGCCATCAATTTGGATTTAATGAAACAAAACGCAGCAAATCACACAGCAGAAGCAGAAGATGCGTTTCCAAGTTGGTTTTCTAGGCATGAGAGGAGACTGTTGCAGTCTTCTTCAATAAAGGCACATCTTGTGGTAGCAAAAGATGGTTCAGGACAATTCAAAAGGGTCCAAGATGCTCTGAATGCAGCAGCAAAGAGAAGATATAAAACGAGGTATGTGATATATGTGAAGAAAGGAGTATATAGAGAGAACATTGAGGTTGCTGTGAACAATGATAACATCATGTTGGTTGGTGATGGCATGAAAAACACAATAATAACAAGTGGCAGAAGTGTTCAAGATGGTTTTACCACTTATAGCTCTGCAACAGCTGGCATAGATGGCCTTCACTTCATTGCACGTGACATTACCTTCCAAAACACCGCTGGTCCTCACAAAGGTCAAGCCGTGGCACTTCGATCAGCTTCGGATCTCTCAGTATTCTACAGATGTGCCATAATAGGTTACCAAGACACCCTTATGGTTCATGCACAGCGCCAATTTTACAGACAATGCAAAATATATGGCACTGTAGACTTCATCTTTGGCAATGCAGCCGTGGTTTTTCAGAATTGTAACATCTTTGCAAGAAAGCCTTTGGATGGCCAAGCAAACATGATCACGGCCCAGGGACGAGGAGACCCATTCCAAAACACTGGAATTTCCTTCCACAATTGTCAAATCAAGGCCGCAGCAGACCTAAAGCCCGTTGTTGACAAATACAATACCTTCTTGGGCAGGCCATGGCAGCAATATTCAAGAGTAGTGGTCATGAAAACCTTCCTGGACTCCTTGGTGAACCCATTGGGCTGGTCTCCATGGGGTGATACTGATTTTGCTCAGGACACACTGTATTATGGAGAGTATGAGAACTATGGGCCTGGTTCATCTACAACTAACAGAGTAAAATGGCCTGGTTTTCATGTCATAAAAAGCCCAGTTGAGGCCTCGCAATTCACAGTCACTGGACTCCTTGCTGGCCCCACATGGTTGCCTACCACAACTGTGCCATTTACCTCTGGCCTATGA 1710 0.4292 LLSTQHQAKSSKQKKKNFIDWWCNLTLIVYSDLLNFPLLEMAILRKTFLTLLFLSSVFSLASSRREPSSSNIDWWCNLTPHPGPCKYHISQLNQHFTIKHRTEFRGMLVQLALNQALIMQREAHDSEQNMVTEKHRTVHGDCLKLYENTIFHLNRTLESLHVKRGFSPVDAQTWLSTALTNIETCRTEAIELNAQDFKVPTGRNNVTEMIRNSLAINLDLMKQNAANHTAEAEDAFPSWFSRHERRLLQSSSIKAHLVVAKDGSGQFKRVQDALNAAAKRRYKTRYVIYVKKGVYRENIEVAVNNDNIMLVGDGMKNTIITSGRSVQDGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAIIGYQDTLMVHAQRQFYRQCKIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIKAAADLKPVVDKYNTFLGRPWQQYSRVVVMKTFLDSLVNPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTTNRVKWPGFHVIKSPVEASQFTVTGLLAGPTWLPTTTVPFTSGL. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07610 569 SMART PMEI_2 67 216 IPR006501 GO:0004857
Seca3g07610 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 217 IPR035513 -
Seca3g07610 569 CDD PMEI-like_3 74 217 - -
Seca3g07610 569 Pfam Pectinesterase 257 554 IPR000070 GO:0030599|GO:0042545
Seca3g07610 569 FunFam Pectinesterase 250 569 - -
Seca3g07610 569 SUPERFAMILY Pectin lyase-like 252 568 IPR011050 -
Seca3g07610 569 Gene3D - 250 569 IPR012334 -
Seca3g07610 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 221 IPR035513 -
Seca3g07610 569 NCBIfam pectinesterase inhibitor domain 48 218 IPR006501 GO:0004857
Seca3g07610 569 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Seca3g07610 569 PANTHER PECTINESTERASE 54 560 - -
Seca3g07610 569 Pfam Plant invertase/pectin methylesterase inhibitor 71 216 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07610 Seca-Chr3 186337820 186339660 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07610 69 569 Carbohydrate Esterase AT3G47400 56.615 0.0 593