Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07607 ATGGGAATCTTGGGAAAGACGTTCCTAACATTCTTATTGTTATCTTCAATTTTCTCATTAGCCTCATCAAGAAGAGGACCTTCCTCCAGCAACATAGAATGGTGGTGCAACCTAACCCCACACCCTGGATCATGCAAATACTACACAAGTCAAATGAACCATCATTTCACAATCAAACACAGAACTGAATTCAGGGGAATGCTTGTTCAACTGGCTTTAAAACAAGCACATAACATGCATAGAGAAGCACAGCATGATTCTGAACAGAACATAGTGACAGAGAAGCATAGAACTGTACATGGTGATTGTTTGAAGCTGTATGAAAACACCATCTTTCATCTCAATCGTACCCTTGAAAGCCTTCATGTGAAGAGGGGATTTTCACCGGTTGATGCACAAACTTGGCTCAGCACTGCTCTTACCAACATTGAAACGTGTAGAACAGGAGCTATAGAACTCAATGCTCAAGATTTCAAGGTGCCAACTGGGAGCAATAATGTTACTGAGATGATAAGGAACAGCTTAGCTGTCAATGTGAATTTCACGAAACATAATGCAGCAAATCACACAGCAGAAGCAGAAGATGCTTTTCCAAGTTGGTTTTCAAGGCATGAGAGGAGACTGTTGCAGTCTTCTTCAATAAAGGCACATCTTGTGGTAGCAAAAGATGGCTCAGGGCAATTCAGAAGGGTGCAAGATGCTCTGAATGCAGCGGCAAAGAGAAGATATAAAACGAGGTATGTGATATATGTGAAGAATGGAGTATACAGAGAGAACATTGAGGTTGCTGTGAACAATGATAACATCATGTTGGTTGGTGATGGTATGAAAAACACAATAATAACAAGCGGTAGAAGTGTTCAAGATGGTTTTACCACTTATAGTTCTGCAACAGCTGGCATAGATGGTCTTCACTTCATTGCACGTGACATTACCTTCCAAAACACCGCCGGTCTTCACAAAGGTCAAGCCGTGGCACTCCGATCAGCTTCAGACCTCTCAGTATTCTACAGATGTGCCATAATAGGTTACCAAGACACCCTCATGGTTCATGCACAGCGTCAATTTTATAGGCAATGCAAAATATATGGCACCGTGGACTTCATCTTTGGCAATGCCGCAGTGGTTTTTCAGAATTGTAACATTTTTGCAAGAAAGCCTTTAGATGGACAAGCCAACATGATCACGGCCCAAGGTAGGGGAGACCCATTCCAAAACACTGGAATTTCCTTCCACAATTGTCAAATCAAGGCCGCAGGAGACCTAAAGCCCGTTGTTGACAAATACAACACCTTCTTGGGCAGGCCATGGCAGCAATACTCAAGAGTAGTGGTCATGAAAACCTTCATGGACTCCTTGGTGAACCCATTGGGTTGGTCTCCATGGGATGATACTAATTTTGCTCAAGACACACTGTATTATGGAGAATATGAGAATTATGGGCCTGGTTCTTCTACAATCAACAGAGTAAAGTGGCCTGGTTTTCATGTCATAAAGAGTCCAGTTGAGGCATCACAGTTCACAGTCACTGGACTCCTTGCTGGCCCCACATGGTTGCCTGCCACAAATGTGCCATTTACCTCTGGCCTTTGA 1593 0.4306 MGILGKTFLTFLLLSSIFSLASSRRGPSSSNIEWWCNLTPHPGSCKYYTSQMNHHFTIKHRTEFRGMLVQLALKQAHNMHREAQHDSEQNIVTEKHRTVHGDCLKLYENTIFHLNRTLESLHVKRGFSPVDAQTWLSTALTNIETCRTGAIELNAQDFKVPTGSNNVTEMIRNSLAVNVNFTKHNAANHTAEAEDAFPSWFSRHERRLLQSSSIKAHLVVAKDGSGQFRRVQDALNAAAKRRYKTRYVIYVKNGVYRENIEVAVNNDNIMLVGDGMKNTIITSGRSVQDGFTTYSSATAGIDGLHFIARDITFQNTAGLHKGQAVALRSASDLSVFYRCAIIGYQDTLMVHAQRQFYRQCKIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIKAAGDLKPVVDKYNTFLGRPWQQYSRVVVMKTFMDSLVNPLGWSPWDDTNFAQDTLYYGEYENYGPGSSTINRVKWPGFHVIKSPVEASQFTVTGLLAGPTWLPATNVPFTSGL. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07607 530 FunFam Pectinesterase 211 530 - -
Seca3g07607 530 Gene3D - 210 530 IPR012334 -
Seca3g07607 530 CDD PMEI-like_3 34 183 - -
Seca3g07607 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 181 IPR035513 -
Seca3g07607 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 178 IPR035513 -
Seca3g07607 530 Pfam Pectinesterase 218 515 IPR000070 GO:0030599|GO:0042545
Seca3g07607 530 ProSitePatterns Pectinesterase signature 2. 362 371 IPR033131 -
Seca3g07607 530 NCBIfam pectinesterase inhibitor domain 7 178 IPR006501 GO:0004857
Seca3g07607 530 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
Seca3g07607 530 SUPERFAMILY Pectin lyase-like 213 529 IPR011050 -
Seca3g07607 530 SMART PMEI_2 27 177 IPR006501 GO:0004857
Seca3g07607 530 PANTHER PECTINESTERASE 18 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07607 Seca-Chr3 186139061 186141989 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07607 26 530 Carbohydrate Esterase AT3G47400 57.143 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07607 K01051 - gmx:100806133 826.624