Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07576 ATGCTATACTTGAACAGGAAAGTTAGTGTGATGGATTTGTCTAAAAAGTTTGGGCTTGAATATCGATTGCTTCATGCAATTACCAAAGGGCGCACCTGGTATGGCAACTGGGGTTATGAATTTGGCACTGGCAGCTATGCTCTCACTCAAGATGTTTACCAGAAAGCAGTGAATACCCTGTCATGTATGCCCTTGTCCACTTTCTTATTCCAGGGTCGTGGGCCTCGAAATCGCCTGCAGAGTGTCATCACTCTTTACCAATCTCTGGCTGAGACCGAACTTCTAACAATTAAAGATCTCTTCTCCTTTTTGTTGACGTTGATCCCGGAATTCCGCAAGCCCCTGATCACGAGAACATCTGAACAACATGAATGCACCAGCACTTCTAATGTTTTGTGTGCTTGGACAAGTAATGATGTTGAAGATGTGCAAAAAGCTTTTATTAAGGTGTTGCTTGCATCAAGTGCCTGTAGTGAGAACAAATGGGTGAGTTGGCGTGCTCTCAAGGGTGCATTATGCAGAGGGGTTGCATCTCCTGAGCTTCTAGATTATAGTCTTAAGCACTTAGGAGGGAAATTAGTTGCCAATGGCATGGTAGTTCGTTCACAATGCAATCCCATTTCTAGTGCGGTGGAGTTCAGGCTTGAACCATTGAGTAATATGCATAATGGAATTGGTGCAATCTCAAGCTATCCATCAGAAGAGCAAGTGATATCTGATCTGAGGTTTTTATTTGATTCAATTGTTGATCCTGACAAAATGGTGAGCACTGGATCTCGGGTTATGAAGAAACAGGTGGCTGATTCAGCAAGGAAGCTCTTAGACTGTAAGCAATTTATGAAGGATTATTACAAGCCTGAAAAAGTGGAAGAAGAACTGCCTTCAGCCATTAAGCTTTGGTGTAGTGTGGAGCTTTCTGATCAGCCTAAAGATGAACCATCCCCACCACCAGAGCTAATTATCTTGCCTTTGAATGCTACTGTTGCTAACCTCAGGAGTGAAGCCAATAGTGTTTTTCAAGAAGTATATGTGATGTATAAGAGATTTCAGGCAGAGAATCTCCTAGGGTATGGATCAATTAGTGATTCTTACACCTTAAAATTCTTGCTTGGAACAAGTGGGTCTGTCCGAATTCAAGGAAAATGCCTAGCTAAACATGGGCTAAACCGTTTCCGAATGGAAAGAGGAACAGAAACATGGAAAGTTGATTGCATTTGTGGAGCTAAGGATGATGATGGAGAAAGAATGTTAGCATGTGATACCTGTGGTGTTTGGCTACATACCAGATGTGCTGGGATTAAGAACTCTGATGCTATTCCTTCAAAGTTTGTGTGTATGAGATGCGTAAACTCCTATCGTAGGGAAGCCAAAAAACTGCAAGACTCTAATGGGGAAGCTTATAAATCCAACACAACCTGCAGAGGTGAAGTGGTGGCCACTGATAATCCAGCAATTGCTGGTAACATGACTGTAAATTTTGGTGTACGTTAA 1491 0.4225 MLYLNRKVSVMDLSKKFGLEYRLLHAITKGRTWYGNWGYEFGTGSYALTQDVYQKAVNTLSCMPLSTFLFQGRGPRNRLQSVITLYQSLAETELLTIKDLFSFLLTLIPEFRKPLITRTSEQHECTSTSNVLCAWTSNDVEDVQKAFIKVLLASSACSENKWVSWRALKGALCRGVASPELLDYSLKHLGGKLVANGMVVRSQCNPISSAVEFRLEPLSNMHNGIGAISSYPSEEQVISDLRFLFDSIVDPDKMVSTGSRVMKKQVADSARKLLDCKQFMKDYYKPEKVEEELPSAIKLWCSVELSDQPKDEPSPPPELIILPLNATVANLRSEANSVFQEVYVMYKRFQAENLLGYGSISDSYTLKFLLGTSGSVRIQGKCLAKHGLNRFRMERGTETWKVDCICGAKDDDGERMLACDTCGVWLHTRCAGIKNSDAIPSKFVCMRCVNSYRREAKKLQDSNGEAYKSNTTCRGEVVATDNPAIAGNMTVNFGVR. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07576 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 454 IPR013083 -
Seca3g07576 496 ProSiteProfiles Zinc finger PHD-type profile. 401 451 IPR019787 -
Seca3g07576 496 SMART PHD_3 403 449 IPR001965 -
Seca3g07576 496 Pfam PHD-finger 404 450 IPR019787 -
Seca3g07576 496 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 5 462 - -
Seca3g07576 496 CDD PHD_MMD1_like 403 448 - -
Seca3g07576 496 SUPERFAMILY FYVE/PHD zinc finger 394 452 IPR011011 -
Seca3g07576 496 ProSitePatterns Zinc finger PHD-type signature. 404 448 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07576 Seca-Chr3 185116228 185119663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07576 6 448 PHD Transcription Factor Family AT5G22260 27.447 1.66e-63 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g07576 PHD 1.9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07576 K26271 - gmx:100780558 709.138