Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07570 ATGATACTAACAACATTAACATTCTCAACAACAACCTCTGCTTCTGCTTCTAACGAAGAAGAACAAGAAGAAGATGTTTCAGTAACGTTGTTGAGAAGGTTCAAGCACTCTTATGTTTCCTCTGATCCAAACAATTTCCTCTCTGACTGGTCCAACCCCACTTCTTCTCATCCCTGCTCTTGGCGCGCCGTTTCTTGCTCCGACGCCGGTCACATCACCACCGTGAACCTCACCGGAGCTTCTCTCTCTGGTACCCTTCACCTTCCAACTCTCACTTCAATACCCTCTTTGCAACACCTTCTCTTACGTGGCAATTCCTTCAAATCTTTCAACTTTTCCGTTTCCCCTTCTTGCTCTCTTGTGACTCTTGACCTTTCAGCTAACAACTTTTCCGGTGAGTTTCCCTTCCATGACCTTGTTCCTTGCCATAGTCTCAGATATCTCAACTTGTCTCGGAATTTGATCACTGAAGCAGCTTTTGGGTTTGGTTCTTCTCTGGTTGAACTTGACTTGTCGAGAAATCGGTTTTCTGACATTGACTTTTTGGTATCTGCTATTGGAAGAAACTGTCAGGGTTTGGTTCGGCTTAATTTCTCTGATAACCGAATCGCGGGTCAACTCAGCGAGTCTCTTGTTCCTTGTGCCAACCTCTCTACTTTGGACTTGTCTCATAATCTGCTTTCTGGGGAGATACCCCCTCGTCTTGTGGGGTATGATTTGGAGGTTTTGGATCTCACAAGCAACAATTTTTCTGGTGGGTTTTCTGGGTTTGATTTTGGGAACTGCAGGAGCCTTGTTTGGTTGAGTTTCTCTCACAATGCGCTTTTGGGTGGTGAGTTTCCACCAAGCTTGAGGAATTGTCAGGTTCTGGAGAGTCTAGATCTTTCCCACAATGAGCTCAGGTTGAAGATTCCTGGGGCTCTTCTTGGAGGGTTAGGGAGTTTGAAGGAACTGTTTTTAGGGCATAATCATTTTTATGGAGAAATACCTGGGGAACTTGGAATGGCTTGTGGGTCTTTGGAGGTGCTTGATCTGTCTGAGAATAAGCTTTCTGGTGAGTTGCCTTTGACCTTTGGAAAATGCTCTTCTTTGAAGAGTCTTAACCTTGCTAAGAATTATCTCTCTGGAAACTTCCTTACCTCGGTTGTTAGCAAACTTTCCAATCTTAGATATCTCTATGTGCCATTCAATAACATAACAGGACCTGTTCCCTTGTCTCTTGCTAATTGTACACAGCTTCAGGTTCTTGACCTCAGTTCCAATGCCTTCACTGGCAATGTCCCTTCCTGGTTTTGTTCTTCTCTCCCTGCCTTGGAGAAGTTACTTCTGGCTGACAATTACCTCTCAGGGATGGTGCCTGCAGAGCTTGGTGGGTGCAAGAATTTGAGGACAATTGATTTCAGCTTTAATAATTTGAATGGCTCAATACCCTTGAATGTTTGGTCCTTGCCTAATCTTTCTGACTTGATTATGTGGGCAAACAACCTCTCAGGGGAGATTCCTGAAGGAATATGTGTCAATGGAGGGAACCTTGAGACCTTGATTCTTAATAACAATTTCATCTCAGGCTCCATTCCTCAGTCAATTGCCAATTGCACCAACATGATTTGGGTGTCCTTGGCCAGCAACCGCATTACTGGGGGAATACCTGCTGGTATTGGGAATCTGAATGCTCTTGCTATACTCCAATTGGGTAACAATTCACTAACTGGACAGATCCCTCCAGAGATTGGGAAGTGTAGGAGGCTCATTTGGTTAGATTTGAATAGCAATAACTTGACTGGTACTATCCCATCTGAGCTTGCCAATCAAGCTGGATTGGTTATTCCAGGGAGTGTTTCAGGGAAGCAGTTTGCATTTGTGAGAAATGAAGGTGGGACAAGTTGCAGGGGAGCTGGAGGGTTAGTTGAATTTGAGGATATCAGGACAGAGAGGCTTGAAGGTTTTCCTATGGTCCATTCCTGCCCATTGACAAGAATATACTCTGGTTGGACTGTTTATACCTTTACTTCCAATGGCAGCATGATCTACCTTGATCTTTCCTACAATTCCTTGTCAGGGAGTATTCCTGAAAACTTTGGTGCAATGGCCTATTTGCAGGTCTTAAATCTGGGACACAATAGGCTCACTGGAAGTATTCCAGACAGCTTTGGTGGTCTAAAAGCAATAGGAGTGCTTGATCTCTCCCACAATAACCTTCAAGGTTTCATCCCTGGGTCATTGGAATCTCTATCTTTTCTCAGTGACCTTGATGTGTCTAATAATAACCTTACAGGCACCATTCCTTCTGGTGGTCAGCTAACCACTTTCCCTGCTTCTAGATATGAAAACAACTCTAACCTTTGTGGCGTCCCGTTACCACCATGTGGCTCTTCAAATCACTCAGCAGCTTTTCATACTTGGAAGAAGAAACAACCTATTGCAACAATGATTGTTGTTGGCCTCCTTTCCTTCCTCTTGGTCATTGTTGGGCTTGTATTAGCTTTATATAGGGTGGAAATGACCCGGAAGAAGGAGGAAAGAAGAGAAAAATATATAGAAAGTCTTCCAACTTCAGGCAGCAGCAGTTGGAAACTTTCTAGCTATCCTGAGCCTCTAAGTATCAATGTTGCCACCTTTGAGAAACCTCTGCGTAAGTTGACATTTGCCCATCTTCTTGAGGCTACTAACGGTTTCAGTGCTGAAAGCTTGATAGGGTCTGGAGGGTTTGGTGAAGTCTACAAAGCAAAGCTGAAAGATGGTTGTGTTGTTGCTATCAAGAAGCTCATTCATGTCACAGGTCAGGGAGATAGAGAGTTCATGGCTGAAATGGAAACTATTGGGAAGATTAAGCATAGGAACTTGGTTCCACTGCTGGGTTACTGTAAAGTTGGAGAGGAGAGGCTTCTTGTGTATGAATACATGAAATGGGGAAGTTTGGAGGCTGTTCTACATGACAGGGCTAAAGGAGGAGGTTCAAAGCTTGACTGGGAAGCAAGAAAGAAGATTGCCATAGGGTCAGCAAGAGGTCTTGCATTTCTTCACCATAGTTGCATACCTCACATTATACACAGGGACATGAAGTCCAGCAATATTCTTCTTGATGAAAATTTTGAGGCCAGAGTTTCAGATTTTGGCATGGCAAGATTGGTTAATGCCCTTGACACTCATCTCACAGTCAGCACACTTGCTGGAACACCAGGTTATGTACCCCCTGAATACTACCAAAGCTTTAGGTGCACAGCAAAAGGGGATGTCTATAGTTATGGTGTCATACTGCTAGAGCTTCTATCAGGGAAGAGGCCAATTGACTCAGCTGAGTTTGGTGATGACAGCAATCTTGTTGGATGGTCTAAGAAGCTTCATAGAGAGAAAAGAATTAATGAAATACTTGATCCTGATTTAATCATGTACTCATCTAGTGAAAGTGAACTATATCAGTATTTGAGAATTGCTTTTGAATGTCTAGATGAAAGACCATACCGGCGGCCAACCATGATACAAGTGATGGCAATGTTTAAAGAGCTTCAGGTGGACACAGATAGTGATATCCTTGATGGCTTCTCTCTGAGAGACAATGTTATTGATGAAGCATGA 3576 0.4354 MILTTLTFSTTTSASASNEEEQEEDVSVTLLRRFKHSYVSSDPNNFLSDWSNPTSSHPCSWRAVSCSDAGHITTVNLTGASLSGTLHLPTLTSIPSLQHLLLRGNSFKSFNFSVSPSCSLVTLDLSANNFSGEFPFHDLVPCHSLRYLNLSRNLITEAAFGFGSSLVELDLSRNRFSDIDFLVSAIGRNCQGLVRLNFSDNRIAGQLSESLVPCANLSTLDLSHNLLSGEIPPRLVGYDLEVLDLTSNNFSGGFSGFDFGNCRSLVWLSFSHNALLGGEFPPSLRNCQVLESLDLSHNELRLKIPGALLGGLGSLKELFLGHNHFYGEIPGELGMACGSLEVLDLSENKLSGELPLTFGKCSSLKSLNLAKNYLSGNFLTSVVSKLSNLRYLYVPFNNITGPVPLSLANCTQLQVLDLSSNAFTGNVPSWFCSSLPALEKLLLADNYLSGMVPAELGGCKNLRTIDFSFNNLNGSIPLNVWSLPNLSDLIMWANNLSGEIPEGICVNGGNLETLILNNNFISGSIPQSIANCTNMIWVSLASNRITGGIPAGIGNLNALAILQLGNNSLTGQIPPEIGKCRRLIWLDLNSNNLTGTIPSELANQAGLVIPGSVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYSGWTVYTFTSNGSMIYLDLSYNSLSGSIPENFGAMAYLQVLNLGHNRLTGSIPDSFGGLKAIGVLDLSHNNLQGFIPGSLESLSFLSDLDVSNNNLTGTIPSGGQLTTFPASRYENNSNLCGVPLPPCGSSNHSAAFHTWKKKQPIATMIVVGLLSFLLVIVGLVLALYRVEMTRKKEERREKYIESLPTSGSSSWKLSSYPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKWGSLEAVLHDRAKGGGSKLDWEARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSAEFGDDSNLVGWSKKLHREKRINEILDPDLIMYSSSESELYQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTDSDILDGFSLRDNVIDEA. 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07570 1191 Gene3D Phosphorylase Kinase; domain 1 855 967 - -
Seca3g07570 1191 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 434 610 - -
Seca3g07570 1191 FunFam Brassinosteroid LRR receptor kinase 968 1171 - -
Seca3g07570 1191 SUPERFAMILY Protein kinase-like (PK-like) 873 1166 IPR011009 -
Seca3g07570 1191 Pfam Brassinosteroid receptor island domain 606 670 IPR045381 -
Seca3g07570 1191 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 138 307 - -
Seca3g07570 1191 ProSitePatterns Protein kinases ATP-binding region signature. 898 921 IPR017441 GO:0005524
Seca3g07570 1191 FunFam Serine/threonine-protein kinase BRI1-like 1 613 670 - -
Seca3g07570 1191 MobiDBLite consensus disorder prediction 1 17 - -
Seca3g07570 1191 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 159 433 - -
Seca3g07570 1191 Gene3D Transferase(Phosphotransferase) domain 1 968 1181 - -
Seca3g07570 1191 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 668 788 - -
Seca3g07570 1191 SUPERFAMILY RNI-like 318 763 - -
Seca3g07570 1191 SUPERFAMILY RNI-like 75 400 - -
Seca3g07570 1191 SMART LRR_typ_2 720 743 IPR003591 -
Seca3g07570 1191 SMART LRR_typ_2 142 165 IPR003591 -
Seca3g07570 1191 SMART LRR_typ_2 337 360 IPR003591 -
Seca3g07570 1191 SMART LRR_typ_2 312 336 IPR003591 -
Seca3g07570 1191 SMART LRR_typ_2 744 767 IPR003591 -
Seca3g07570 1191 SMART LRR_typ_2 556 580 IPR003591 -
Seca3g07570 1191 SMART LRR_typ_2 696 719 IPR003591 -
Seca3g07570 1191 SMART LRR_typ_2 435 458 IPR003591 -
Seca3g07570 1191 SMART LRR_typ_2 483 507 IPR003591 -
Seca3g07570 1191 SMART LRR_typ_2 214 238 IPR003591 -
Seca3g07570 1191 Pfam Leucine rich repeat 412 472 IPR001611 GO:0005515
Seca3g07570 1191 Pfam Leucine rich repeat 699 757 IPR001611 GO:0005515
Seca3g07570 1191 ProSiteProfiles Protein kinase domain profile. 892 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07570 1191 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1015 1027 IPR008271 GO:0004672|GO:0006468
Seca3g07570 1191 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Seca3g07570 1191 Gene3D Ribonuclease Inhibitor 162 790 IPR032675 -
Seca3g07570 1191 MobiDBLite consensus disorder prediction 1 24 - -
Seca3g07570 1191 Gene3D - 613 670 - -
Seca3g07570 1191 Pfam Leucine Rich Repeat 510 532 IPR001611 GO:0005515
Seca3g07570 1191 SMART serkin_6 892 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07570 1191 Gene3D Ribonuclease Inhibitor 19 131 IPR032675 -
Seca3g07570 1191 ProSiteProfiles Leucine-rich repeat profile. 165 186 IPR001611 GO:0005515
Seca3g07570 1191 Pfam Protein kinase domain 894 1164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07570 1191 FunFam serine/threonine-protein kinase BRI1-like 2 853 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07570 Seca-Chr3 184902566 184906162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07570 1 1190 Receptor kinase-like Gene Family AT1G55610 63.561 0.0 1502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca3g07570 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07570 - - gsj:114409366 1786.93